BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG01FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig788 1140 0.0
>3x_Contig788
Length = 2349
Score = 1140 bits (575), Expect = 0.0
Identities = 688/710 (96%), Gaps = 13/710 (1%)
Strand = Plus / Plus
Query: 86 ttcccatataacttccgcaaaccatggatgcgatttgatatcatctggcccgctttgtaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcccatataacttccgcaaaccatggatgcgatttgatatcatctggcccgctttgtaa 325
Query: 146 gttacctaatctacgggtcaaatctgcagtgatcaacttacctaatagatccacaacatc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttacctaatctacgggtcaaatctgcagtgatcaacttacctaatagatccacaacatc 385
Query: 206 agggtggaaaaatggtggataaacgacttcaccagctaagattttctcataggtcttcat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agggtggaaaaatggtggataaacgacttcaccagctaagattttctcataggtcttcat 445
Query: 266 tggcgtaacatcataaaatggagtataaccagcgagcatttcgaagattaagattccaag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggcgtaacatcataaaatggagtataaccagcgagcatttcgaagattaagattccaag 505
Query: 326 agaccaccagtcaacagacttgttatatggtttcgttgtaattacttcaggagcaatgta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaccaccagtcaacagacttgttatatggtttcgttgtaattacttcaggagcaatgta 565
Query: 386 atcaggggtaccacataacgtccacgtcactgtgattacctctttggcgaacccaaaatc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atcaggggtaccacataacgtccacgtcactgtgattacctctttggcgaacccaaaatc 625
Query: 446 cgttatcttgatatgcccattcctatccaatagaatgttttctggcttcaagtcacggta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cgttatcttgatatgcccattcctatccaatagaatgttttctggcttcaagtcacggta 685
Query: 506 tattatgttatgagaatgtaagtattccaaagctaaagtcacctctgctgcataaaactt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tattatgttatgagaatgtaagtattccaaagctaaagtcacctctgctgcataaaactt 745
Query: 566 agccacagggtttggggaaatcgttgggatttttctgagcaacgagaacaattcaccacc 625
|||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 746 agccacagggtt--ggggaatcgttggga-ttttctgagcaacgagaacaattcaccacc 802
Query: 626 tttcgatttaatccataaccatgaattagattaccagaatccctggaacgtaccccacat 685
|||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||
Sbjct: 803 -ttcgatataatccataaccatgaa-tagattacgagaat-cctggaacgtaccccacat 859
Query: 686 ccgaattaagaaaagatgttcaacccagctttaacaatccggcttttatcatttcggatg 745
||||||||||||| ||||||||| ||||||||||| ||||| |||| |||| |||| |||
Sbjct: 860 ccgaattaagaaaggatgttcaa-ccagctttaac-atccgtctttcatca-ttcgtatg 916
Query: 746 ctcaattttgctttaattcgaatgaattgaatgtttttttcaaaactttg 795
||||| ||||| || |||||||||| ||| ||| ||||||||||||||||
Sbjct: 917 ctcaa-tttgc-ttcattcgaatgatttg-atg-ttttttcaaaactttg 962
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5594
Number of Sequences: 1807
Number of extensions: 5594
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)