BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG01RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig415 777 0.0
>3x_Contig415
Length = 1171
Score = 777 bits (392), Expect = 0.0
Identities = 392/392 (100%)
Strand = Plus / Plus
Query: 43 gctttctgataattatcaaaatcattacccggatattagctttaatttcgacttctcttt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gctttctgataattatcaaaatcattacccggatattagctttaatttcgacttctcttt 830
Query: 103 taatgtttgaagaaagtatataaagatttaaagtatcgttcgtttatgttttacagtacg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 taatgtttgaagaaagtatataaagatttaaagtatcgttcgtttatgttttacagtacg 890
Query: 163 ttgcgtttggaatatgttgataattatatatagttgatgtaacatcagtctgacgagggg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ttgcgtttggaatatgttgataattatatatagttgatgtaacatcagtctgacgagggg 950
Query: 223 aggcagtcaaataaaaaaatgtagcgttagaaatgggaatgtaaatttttttatcctttc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 aggcagtcaaataaaaaaatgtagcgttagaaatgggaatgtaaatttttttatcctttc 1010
Query: 283 ttcatagagttttaatttcgtgatcaacaacatcaaccaaagtttcaagttccagtttgg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 ttcatagagttttaatttcgtgatcaacaacatcaaccaaagtttcaagttccagtttgg 1070
Query: 343 aacgagctgcttgtagccaatcgtcagcttctagtctagaccagccttgtagttgcacga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 aacgagctgcttgtagccaatcgtcagcttctagtctagaccagccttgtagttgcacga 1130
Query: 403 catcttcgactgccttgtcaagtctgttgagt 434
||||||||||||||||||||||||||||||||
Sbjct: 1131 catcttcgactgccttgtcaagtctgttgagt 1162
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9726
Number of Sequences: 1807
Number of extensions: 9726
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)