BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZG03FM1.SCF screened BAC_end
         (984 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1572                                                        1072   0.0  
3x_Contig1183                                                         119   1e-26
3x_Contig866                                                          109   1e-23

>3x_Contig1572 
          Length = 12810

 Score = 1072 bits (541), Expect = 0.0
 Identities = 546/548 (99%)
 Strand = Plus / Minus

                                                                         
Query: 90    ccacagtaatggtactttgattgtcctctcatacccaatcttcttgttttcaagaatggg 149
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12024 ccacagtaatggtactttgattgtcctctcatacccaatcttcttgttttcaagaatggg 11965

                                                                         
Query: 150   aacaaggctctgatcaatttaccaagagtggcctgagataagggtttcaactggttttga 209
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11964 aacaaggctctgatcaatttaccaagagtggcctgagataagggtttcaactggttttga 11905

                                                                         
Query: 210   gcacaagacgccgcgtattgggcaaaaatcctaccgcggcggacgtaagattcagtgtct 269
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904 gcacaagacgccgcgtattgggcaaaaatcctaccgcggcggacgtaagattcagtgtct 11845

                                                                         
Query: 270   gtcacacagttgctcattagccatattaaggcatacacttgcctctcgcgttctctgtgc 329
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11844 gtcacacagttgctcattagccatattaaggcatacacttgcctctcgcgttctctgtgc 11785

                                                                         
Query: 330   tgttctgccgattgaatttcagatttggcatgcgtagaggtatccatgttgagtacttgg 389
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11784 tgttctgccgattgaatttcagatttggcatgcgtagaggtatccatgttgagtacttgg 11725

                                                                         
Query: 390   atttcagcatttctaactacagaagcatattcgctcaagggcttatctttgttcttcatt 449
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11724 atttcagcatttctaactacagaagcatattcgctcaagggcttatctttgttcttcatt 11665

                                                                         
Query: 450   gctactaattttaagatattctcctgggttgttcttttcgaagtcacagcagcacccgtc 509
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11664 gctactaattttaagatattctcctgggttgttcttttcgaagtcacagcagcacccgtc 11605

                                                                         
Query: 510   cgtacaggctgcatagcttcgtcaactttctgttttttccagcgttggtcttggtcttgn 569
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 11604 cgtacaggctgcatagcttcgtcaactttctgttttttccagcgttggtcttggtcttgt 11545

                                                                         
Query: 570   taaatgaactgttgctgttgctgctgttgttgatgttgatgttgttgatgttgatgttgt 629
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11544 aaaatgaactgttgctgttgctgctgttgttgatgttgatgttgttgatgttgatgttgt 11485

                     
Query: 630   tgatgttg 637
             ||||||||
Sbjct: 11484 tgatgttg 11477


>3x_Contig1183 
          Length = 3176

 Score =  119 bits (60), Expect = 1e-26
 Identities = 103/117 (88%), Gaps = 3/117 (2%)
 Strand = Plus / Minus

                                                                       
Query: 676 tttttttttattttttgtttttttttttattttttttttttttttattttttgttttttt 735
           ||||||||| |||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 488 ttttttttttttttttgttttttttttttttttttttttttttttttttttttttttttt 429

                                                                    
Query: 736 tttgagttttttaatttttttnaaatagtttttattttttttttttttttttttttt 792
           |||   ||||||| |||||||    | |||||| |||||||||||||||||||||||
Sbjct: 428 ttttttttttttattttttttt---ttgtttttgttttttttttttttttttttttt 375



 Score =  107 bits (54), Expect = 4e-23
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                       
Query: 676 tttttttttattttttgtttttttttttattttttttttttttttattttttgttttttt 735
           ||||||||| |||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 198 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 139

                                                                    
Query: 736 tttgagttttttaatttttttnaaatagtttttattttttttttttttttttttttt 792
           |||   ||||||  ||||||| |  |  ||||| |||||||||||||||||||||||
Sbjct: 138 ttttttttttttttttttttttatttttttttttttttttttttttttttttttttt 82



 Score =  107 bits (54), Expect = 4e-23
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                       
Query: 676 tttttttttattttttgtttttttttttattttttttttttttttattttttgttttttt 735
           ||||||||| |||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 202 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 143

                                                                    
Query: 736 tttgagttttttaatttttttnaaatagtttttattttttttttttttttttttttt 792
           |||   ||||||  |||||||    || ||||| |||||||||||||||||||||||
Sbjct: 142 ttttttttttttttttttttttttttatttttttttttttttttttttttttttttt 86



 Score =  107 bits (54), Expect = 4e-23
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                       
Query: 676 tttttttttattttttgtttttttttttattttttttttttttttattttttgttttttt 735
           ||||||||| |||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 559 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 500

                                                                    
Query: 736 tttgagttttttaatttttttnaaatagtttttattttttttttttttttttttttt 792
           |||   ||||||  |||||||    | |||||| |||||||||||||||||||||||
Sbjct: 499 tttttttttttttttttttttttttttgttttttttttttttttttttttttttttt 443


>3x_Contig866 
          Length = 4028

 Score =  109 bits (55), Expect = 1e-23
 Identities = 107/124 (86%), Gaps = 4/124 (3%)
 Strand = Plus / Minus

                                                                       
Query: 676 tttttttttattttttgtttttttttttattttttttttttttttattttttgttttttt 735
           ||||||||| |||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 197 tttttttttttttttttttttttttttttttttttttttttttttgtttttttttttttt 138

                                                                       
Query: 736 tttgagttttttaatttttttnaaatagtttttatttttttttttttttttttttttatt 795
           |||   ||||||  |||||||    || ||||| ||||||||||||||||||||||| ||
Sbjct: 137 tttattttttttttttttttt----tattttttttttttttttttttttttttttttttt 82

               
Query: 796 tatt 799
           ||||
Sbjct: 81  tatt 78



 Score =  107 bits (54), Expect = 4e-23
 Identities = 101/117 (86%)
 Strand = Plus / Minus

                                                                       
Query: 676 tttttttttattttttgtttttttttttattttttttttttttttattttttgttttttt 735
           ||||||||| |||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 293 tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttt 234

                                                                    
Query: 736 tttgagttttttaatttttttnaaatagtttttattttttttttttttttttttttt 792
           |||   ||||||  |||||||    | |||||| |||||||||||||||||||||||
Sbjct: 233 tttttttttttttttttttttttttttgttttttttttttttttttttttttttttt 177



 Score =  101 bits (51), Expect = 3e-21
 Identities = 101/117 (86%), Gaps = 3/117 (2%)
 Strand = Plus / Minus

                                                                       
Query: 676 tttttttttattttttgtttttttttttattttttttttttttttattttttgttttttt 735
           ||||||||| |||||| ||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 215 tttttttttgtttttttttttttttttttttttttttttttttttttttttttttttttt 156

                                                                    
Query: 736 tttgagttttttaatttttttnaaatagtttttattttttttttttttttttttttt 792
           ||||  ||||||  |||||||   ||  ||||| ||||||||| |||||||||||||
Sbjct: 155 tttgttttttttttttttttt---attttttttttttttttttattttttttttttt 102


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,971
Number of Sequences: 1807
Number of extensions: 52971
Number of successful extensions: 12607
Number of sequences better than 1.0e-20: 3
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)