BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZG03RM1.SCF screened BAC_end
         (928 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig29                                                           708   0.0  

>3x_Contig29 
          Length = 885

 Score =  708 bits (357), Expect = 0.0
 Identities = 474/513 (92%)
 Strand = Plus / Plus

                                                                       
Query: 39  cattgatagtttcaaacacttcacgaatgatttccatttggttactcgagctaagacaga 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cattgatagtttcaaacacttcacgaatgatttccatttggttactcgagctaagacaga 432

                                                                       
Query: 99  actattagatacatacgattatcaaattaagctaaacgttgagatggagaatttgggtga 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 actattagatacatacgattatcaaattaagctaaacgttgagatggagaatttgggtga 492

                                                                       
Query: 159 tggtgttcaatatgctttcttcaataacatcacatatgtggctccaaaggtcccaacttt 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tggtgttcaatatgctttcttcaataacatcacatatgtggctccaaaggtcccaacttt 552

                                                                       
Query: 219 actcacagcattaagcgctggtaaacttgccaccaatccagccatctatggtgataatat 278
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 553 actcacagcattaagcgctggtaaacttgccaccaatccagccatctatggtgataatct 612

                                                                       
Query: 279 caatgcctttgttctagaatatggggaagttgtcgaaatcgttgtgaacaatcatgatgc 338
           || ||| |||||||||| || |||||||||||||||  ||||| |||| ||| || ||||
Sbjct: 613 cactgcatttgttctagcatctggggaagttgtcgagctcgttatgaaaaataataatgc 672

                                                                       
Query: 339 tggtaaacatccgttccatttacatggtcatgttttccaagtggttcaaaaatcatgagg 398
           ||||||||  | ||||||||| |||||||||| ||||||||||||| | | |||| ||||
Sbjct: 673 tggtaaaccacagttccatttccatggtcatgatttccaagtggttaacacatcaggagg 732

                                                                       
Query: 399 tagagaagatggtgaagatccaatcgactacgatgagaagaacccagtatctgcataccc 458
           |||||| |||||||||||||||||||| || ||||||||||| | | ||||||| |||||
Sbjct: 733 tagagacgatggtgaagatccaatcgaataagatgagaagaaacaaatatctgcctaccc 792

                                                                       
Query: 459 agaatacccagtactaagagatactgttgtagtcgaatctttgggtcacgttgtcttacg 518
           ||||||||||||| ||||||| |||||| | |||||||||||||| || | | | ||| |
Sbjct: 793 agaatacccagtaataagagaaactgttattgtcgaatctttgggacaagatatattaag 852

                                            
Query: 519 tttccaagccacaaacccaggtatatggttctt 551
           ||| |||||||||||||||||| ||||||||||
Sbjct: 853 ttttcaagccacaaacccaggtttatggttctt 885


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6530
Number of Sequences: 1807
Number of extensions: 6530
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)