BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZG03RM1.SCF screened BAC_end (928 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig29 708 0.0 >3x_Contig29 Length = 885 Score = 708 bits (357), Expect = 0.0 Identities = 474/513 (92%) Strand = Plus / Plus Query: 39 cattgatagtttcaaacacttcacgaatgatttccatttggttactcgagctaagacaga 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 cattgatagtttcaaacacttcacgaatgatttccatttggttactcgagctaagacaga 432 Query: 99 actattagatacatacgattatcaaattaagctaaacgttgagatggagaatttgggtga 158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 actattagatacatacgattatcaaattaagctaaacgttgagatggagaatttgggtga 492 Query: 159 tggtgttcaatatgctttcttcaataacatcacatatgtggctccaaaggtcccaacttt 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 tggtgttcaatatgctttcttcaataacatcacatatgtggctccaaaggtcccaacttt 552 Query: 219 actcacagcattaagcgctggtaaacttgccaccaatccagccatctatggtgataatat 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 553 actcacagcattaagcgctggtaaacttgccaccaatccagccatctatggtgataatct 612 Query: 279 caatgcctttgttctagaatatggggaagttgtcgaaatcgttgtgaacaatcatgatgc 338 || ||| |||||||||| || ||||||||||||||| ||||| |||| ||| || |||| Sbjct: 613 cactgcatttgttctagcatctggggaagttgtcgagctcgttatgaaaaataataatgc 672 Query: 339 tggtaaacatccgttccatttacatggtcatgttttccaagtggttcaaaaatcatgagg 398 |||||||| | ||||||||| |||||||||| ||||||||||||| | | |||| |||| Sbjct: 673 tggtaaaccacagttccatttccatggtcatgatttccaagtggttaacacatcaggagg 732 Query: 399 tagagaagatggtgaagatccaatcgactacgatgagaagaacccagtatctgcataccc 458 |||||| |||||||||||||||||||| || ||||||||||| | | ||||||| ||||| Sbjct: 733 tagagacgatggtgaagatccaatcgaataagatgagaagaaacaaatatctgcctaccc 792 Query: 459 agaatacccagtactaagagatactgttgtagtcgaatctttgggtcacgttgtcttacg 518 ||||||||||||| ||||||| |||||| | |||||||||||||| || | | | ||| | Sbjct: 793 agaatacccagtaataagagaaactgttattgtcgaatctttgggacaagatatattaag 852 Query: 519 tttccaagccacaaacccaggtatatggttctt 551 ||| |||||||||||||||||| |||||||||| Sbjct: 853 ttttcaagccacaaacccaggtttatggttctt 885 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6530 Number of Sequences: 1807 Number of extensions: 6530 Number of successful extensions: 41 Number of sequences better than 1.0e-20: 1 length of query: 928 length of database: 10,358,551 effective HSP length: 16 effective length of query: 912 effective length of database: 10,329,639 effective search space: 9420630768 effective search space used: 9420630768 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)