BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG04FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1234 1257 0.0
>3x_Contig1234
Length = 5871
Score = 1257 bits (634), Expect = 0.0
Identities = 774/808 (95%), Gaps = 11/808 (1%)
Strand = Plus / Minus
Query: 86 cttcaccgtagtagtctagtttaaacaaagtggatccaccttcgacttgagtctgcacca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5183 cttcaccgtagtagtctagtttaaacaaagtggatccaccttcgacttgagtctgcacca 5124
Query: 146 tacatggtgggttgacctcagttagtccctcttcatcgtatacacgacgaatagatttca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5123 tacatggtgggttgacctcagttagtccctcttcatcgtatacacgacgaatagatttca 5064
Query: 206 tcaaagcagcacgcaccttcattacagcggacagtgtttcacctctcaacattagatgtc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5063 tcaaagcagcacgcaccttcattacagcggacagtgtttcacctctcaacattagatgtc 5004
Query: 266 tttgatccaaaagaatcgaaggatcagcattttcttgaactctgttggtgaaagcatttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 tttgatccaaaagaatcgaaggatcagcattttcttgaactctgttggtgaaagcatttt 4944
Query: 326 caccggatggtgccgggccaacaatttcaaagtaatcgacgaataattcaacaccacctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 caccggatggtgccgggccaacaatttcaaagtaatcgacgaataattcaacaccacctg 4884
Query: 386 gtgcactcttgctctctggaaccacctttatggtaccatacaatgtgattgtagtttcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 gtgcactcttgctctctggaaccacctttatggtaccatacaatgtgattgtagtttcta 4824
Query: 446 aagtcaaattgacgatttggtaagatctagccaaatcaccagtcaacacagtttgcaaga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 aagtcaaattgacgatttggtaagatctagccaaatcaccagtcaacacagtttgcaaga 4764
Query: 506 acccagtaccatctctcaagatgatgaagacaacagacttattgttacgtagtctgtgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 acccagtaccatctctcaagatgatgaagacaacagacttattgttacgtagtctgtgaa 4704
Query: 566 cccaaccggaaaccttaactctcttgtctaccgcatcgtaagcagaccggatcttccggc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 cccaaccggaaaccttaactctcttgtctaccgcatcgtaagcagaccggatcttccggc 4644
Query: 626 gttctgcctttggtaaac-taaatcttcttcaatggggatgttcatagcttctagcttc- 683
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4643 gttctgcctttggtaaacttaaatcttcttcaatggtgatgttcatagcttctagcttct 4584
Query: 684 tagcagcattcttagccctcttgtt-ctgctgtttctgctccaatt-cttttgcttagca 741
||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 4583 tagcagcattcttag-cctcttgttcctgctgtttctgctccaattccttttgcttagca 4525
Query: 742 gcctttttttttcagcccttcaccaaccttcttggccttctttaaggccttagcactaat 801
||| || || |||| |||||| || |||||||||||||||| || || ||||||||||
Sbjct: 4524 gcc-ttcttcttcaagccttcaacacccttcttggccttcttcaaagcactagcactaat 4466
Query: 802 tttgacgtacccgcccttttgctccatcggntttccttttttgaaaactaaaatttcctt 861
| ||||||| || |||| |||||||||| || | || |||||||| ||||||||||
Sbjct: 4465 ctcgacgtacgcg-ccttctgctccatcgtctt--ccttcttgaaaacataaatttcctt 4409
Query: 862 tgggcttactttacagccttgctttaaa 889
| |||| ||||| |||||||||| ||||
Sbjct: 4408 t-ggctcacttt-cagccttgctataaa 4383
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6941
Number of Sequences: 1807
Number of extensions: 6941
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)