BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG04RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1398 0.0
3x_Contig78 276 8e-74
>3x_Contig1648
Length = 16375
Score = 1398 bits (705), Expect = 0.0
Identities = 733/737 (99%), Gaps = 4/737 (0%)
Strand = Plus / Minus
Query: 39 ccagtcatcttcagcaaatggatcttcgatggaaacaattgggtacttcttgaccaattc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 ccagtcatcttcagcaaatggatcttcgatggaaacaattgggtacttcttgaccaattc 949
Query: 99 gtggtacaagtcagccaattgtggaccagacaaccacttggatgggtcggattctgggtt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 gtggtacaagtcagccaattgtggaccagacaaccacttggatgggtcggattctgggtt 889
Query: 159 cttgaagtccaagtcgtacttaccgtccttgtagaattcagaagaagcacagtccaaacc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 cttgaagtccaagtcgtacttaccgtccttgtagaattcagaagaagcacagtccaaacc 829
Query: 219 gatatcgatcttaccttcgtaaccagcagccttgatagcatcgacaatcaagtccaaagc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 gatatcgatcttaccttcgtaaccagcagccttgatagcatcgacaatcaagtccaaagc 769
Query: 279 ttcttcagcagtttgaatgtttggagcaacaccaccttcgtcaccgacgttaccggcaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttcttcagcagtttgaatgtttggagcaacaccaccttcgtcaccgacgttaccggcaga 709
Query: 339 agcaccgtatctcttcttggtcaaagacttcaagttgtggtaaacttcggaacccattct 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 agcaccgtatctcttcttggtcaaagacttcaagttgtggtaaacttcggaacccattct 649
Query: 399 caaggcttcagcgaaggtttcagcaccagttggagcaatcataaattcttgcaaagccaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 caaggcttcagcgaaggtttcagcaccagttggagcaatcataaattcttgcaaagccaa 589
Query: 459 agcaccaccagcgtgggaaccaccgttcaagacgttcaagaatggaactggcaagacgaa 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agcaccaccagcgtgggaaccaccgttcaagacgttcaagaatggaactggcaagacgaa 529
Query: 519 tggttgggtcttagcaccggccaagtcagccaaatgttggtacaatgggacgttcttggc 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tggttgggtcttagcaccggccaagtcagccaaatgttggtacaatgggacgttcttggc 469
Query: 579 agcagcaccggccttggaagcagccaaggaaacacccaagatagcgttagcacccaactt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agcagcaccggccttggaagcagccaaggaaacacccaagatagcgttagcacccaactt 409
Query: 639 ggacttgttagcagtaccgtctagagacaacaacaagtcatcgacttgttgttggttggt 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggacttgttagcagtaccgtctagagacaacaacaagtcatcgacttgttgttggttggt 349
Query: 699 aaacgtc-acgttagccttaaccaaagctgggagc-atgatgttgttaacgttagaaaca 756
|||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 348 -aacgtcaacgttagccttaaccaaagct-ggagcaatgatgttgttaacgttagaaaca 291
Query: 757 gcagtcaaaacaccctt 773
|||||||||||||||||
Sbjct: 290 gcagtcaaaacaccctt 274
>3x_Contig78
Length = 876
Score = 276 bits (139), Expect = 8e-74
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 39 ccagtcatcttcagcaaatggatcttcgatggaaacaattgggtacttcttgaccaattc 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ccagtcatcttcagcaaatggatcttcgatggaaacaattgggtacttcttgaccaattc 80
Query: 99 gtggtacaagtcagccaattgtggaccagacaaccacttggatgggtcggattctgggtt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gtggtacaagtcagccaattgtggaccagacaaccacttggatgggtcggattctgggtt 20
Query: 159 cttgaagtccaagtcgtac 177
|||||||||||||||||||
Sbjct: 19 cttgaagtccaagtcgtac 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6186
Number of Sequences: 1807
Number of extensions: 6186
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)