BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG05FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1435 0.0
>3x_Contig1778
Length = 27694
Score = 1435 bits (724), Expect = 0.0
Identities = 819/845 (96%), Gaps = 5/845 (0%)
Strand = Plus / Minus
Query: 85 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16169 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 16110
Query: 145 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16109 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 16050
Query: 205 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16049 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 15990
Query: 265 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15989 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 15930
Query: 325 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 15870
Query: 385 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15869 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 15810
Query: 445 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15809 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 15750
Query: 505 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15749 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 15690
Query: 565 atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcggttgctctaa 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15689 atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcggttgctctaa 15630
Query: 625 gagattaacagaataaatactagaacgcgtaacattcgatagctcgttttcacttctcag 684
|||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||
Sbjct: 15629 gagattaacagaataaatactagaacgcgtaacaatcgaaagctcgttttcactcctcag 15570
Query: 685 gcgcaatttcaaaatgtccttcaaatttgactgcagactccacaatttttttttcagata 744
||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
Sbjct: 15569 gcgcaatttcaaaatgtccttcaaatttgactgcagactccacaa-tttctttccagaga 15511
Query: 745 tgatgtccagagatgttattatttcctgacttanaagcgacgacaagctgcttttgcaaa 804
|||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||
Sbjct: 15510 tgatgtccagagatgtta-taattcctgacttagaagcgacgacaagctgctttgcaaaa 15452
Query: 805 ccaaatcgtacggttagatctcgcagtgctgaagaatcatcttcagttattaaatcggca 864
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 15451 ccaaatcgtacgtttagatctcgcagtgctgaagaatcatcttcagttatcaaatcggca 15392
Query: 865 aac-ttttgcccagatt-aatcttnttaggattagatacaactttatncttt-ccaatta 921
||| || |||||||||| |||||| | |||| |||||| |||||| |||| |||||||
Sbjct: 15391 aacattctgcccagattaaatcttttacggataagatacgactttagtctttcccaatta 15332
Query: 922 ctttg 926
|||||
Sbjct: 15331 ctttg 15327
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6094
Number of Sequences: 1807
Number of extensions: 6094
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)