BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG05RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1413 0.0
>3x_Contig1680
Length = 12597
Score = 1413 bits (713), Expect = 0.0
Identities = 789/806 (97%), Gaps = 7/806 (0%)
Strand = Plus / Minus
Query: 44 gcttttaagttgcttgaagacttgacgcctgaataatattccaatgcgtctgatcatttc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6806 gcttttaagttgcttgaagacttgacgcctgaataatattccaatgcgtctgatcatttc 6747
Query: 104 tgcatttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6746 tgcatttttgcctcagttatgaacaatgtcagagattctataattatcgtatttgcatct 6687
Query: 164 atatcattattaactcaattagcagccctcaattttaatgtttcgatcagtttcctttca 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6686 atatcattattaactcaattagcagccctcaattttaatgtttcgatcagtttcctttca 6627
Query: 224 ctgttttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6626 ctgttttgtatcaattggtctatatatacgccattatacatgtaaatgtagaattctctt 6567
Query: 284 taaagttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaaga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6566 taaagttagatccacatgtctctaatacttgtaaattagaaagatagaacagttagaaga 6507
Query: 344 gaagtgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgc 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6506 gaagtgtgcggatgacggctggaactgatgcacatgctcgaataattttaaaaatggtgc 6447
Query: 404 gaggacagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaag 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6446 gaggacagaataaagataatgaagaagaataaggaggggaagaagggaaagaagtagaag 6387
Query: 464 gagaaagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6386 gagaaagaacggaaatctaacagtacgttatgttttgttttttgttcaatatagcttcaa 6327
Query: 524 acttacaacttcaaagcctttggcttttcccatgggtattcttggttagtgaagtgaccg 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6326 acttacaacttcaaagcctttggcttttcccatgggtattcttggttagtgaagtgaccg 6267
Query: 584 tnagaagcggttggncagtagattggtctagccaaatctaattccttcacaagggacacc 643
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6266 t-agaagcggttggcaagtagattggtctagccaaatctaattccttcacaa-ggacacc 6209
Query: 644 a-gtctcaagtcgaagttcttcttggatga-ttcaataactncttcatctgggatggtag 701
| |||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 6208 aggtctcaagtcgaagttcttctt-gatgatttcaataacttcttcatctgggatggtag 6150
Query: 702 cggtaccataggtgtcgacatgcaaggataaaggttcagcgataccgatagcgtaagaga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6149 cggtaccataggtgtcgacatgcaaggataaaggttcagcgataccgatagcgtaagaga 6090
Query: 762 attggacttggactctcttacagattccagcgtgnacccaagacttagc-acccatttat 820
|||||||||| |||||||||||||| |||||||| ||| |||||||||| |||||| ||
Sbjct: 6089 attggacttgaactctcttacagataccagcgtggaccaaagacttagcaacccatctag 6030
Query: 821 cggcgt-agcagcgggacggtcgacc 845
|||||| |||||||| ||||||||||
Sbjct: 6029 cggcgtaagcagcggaacggtcgacc 6004
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6760
Number of Sequences: 1807
Number of extensions: 6760
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)