BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZG06FM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1487                                                        1390   0.0  

>3x_Contig1487 
          Length = 9002

 Score = 1390 bits (701), Expect = 0.0
 Identities = 832/869 (95%), Gaps = 5/869 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   aggacctcactctcaatctgtggtaacaaaaaagtatcccagcaccgtcatattatgggg 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 aggacctcactctcaatctgtggtaacaaaaaagtatcccagcaccgtcatattatgggg 1083

                                                                        
Query: 146  tccgataagagaccacagttgaagaaacagcagaccgaggatgagtccattttgagaggt 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 tccgataagagaccacagttgaagaaacagcagaccgaggatgagtccattttgagaggt 1143

                                                                        
Query: 206  cggggagcaacaaagaatccttctggatcatcaaatctcttcttcaggagttcatctgca 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 cggggagcaacaaagaatccttctggatcatcaaatctcttcttcaggagttcatctgca 1203

                                                                        
Query: 266  tcaaatttatttcggcttcgaaaatcatttgctaatggaggctcgagcagtagtagtaat 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcaaatttatttcggcttcgaaaatcatttgctaatggaggctcgagcagtagtagtaat 1263

                                                                        
Query: 326  tctgctatggtattaaaatcaggacaatcgaagttgaagaacgaggacggtagtgaagtt 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 tctgctatggtattaaaatcaggacaatcgaagttgaagaacgaggacggtagtgaagtt 1323

                                                                        
Query: 386  tcggatactcatcatatgatcgatgttcttccctcgtttgaaatgtataatgctttacat 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 tcggatactcatcatatgatcgatgttcttccctcgtttgaaatgtataatgctttacat 1383

                                                                        
Query: 446  cgcaacatcccacgaggaaatgtaaaccctgaccagcatgatttaccccccagctatcta 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1384 cgcaacatcccacgaggaaatgtaaaccctgaccagcatgatttaccccccagctatcta 1443

                                                                        
Query: 506  taagtggagtcacagcggcaaacgcctgattcatctgacggtaccactgtctcccaactt 565
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 gaagtggagtcacagcggcaaacgcctgattcatctgacggtaccactgtctcccaactt 1503

                                                                        
Query: 566  gatgaaatgttcctctccccatcgccttccttatacgatgccaacactcgcgttggatct 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 gatgaaatgttcctctccccatcgccttccttatacgatgccaacactcgcgttggatct 1563

                                                                        
Query: 626  tcacagagccttcatagctttgatacagtatcctcatgggtgttacaaaacagtttacaa 685
            |||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||
Sbjct: 1564 tcacagagccttcaaagcttgaatacagtatcctcaggggtgttacaaaacagtttacaa 1623

                                                                        
Query: 686  gcgttgagtactagatatgtaggcgat-attgacgatttggatgattcagattatataag 744
            ||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| 
Sbjct: 1624 gcgttgagtactagatatg-aggcgataattgacgatttggatgattcagataatataaa 1682

                                                                        
Query: 745  gatcgagaagctatactcggtaccgaaagtgtcaacacctattgacgtttatattcgaat 804
            ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1683 gatcgagaagctatactcgttaccgaaggtgtcaacacctattgacgttaatattcgaat 1742

                                                                        
Query: 805  tctttagaaggctacgaaaccctgcgaaaagtaaactgaggaagagttcctattaaaagg 864
            |||| ||||||||||||||||||||||| || || |||||||||||| | ||||||| | 
Sbjct: 1743 tcttaagaaggctacgaaaccctgcgaagagaaacctgaggaagagtccatattaaagga 1802

                                                                        
Query: 865  atttactttcggggtttttattcaccgggtttgttggtattaga-aattgattttaacat 923
             | ||||| ||||| | ||| ||| ||||||||||| || |||| ||| ||| | |||||
Sbjct: 1803 gtatacttccggggatatta-tcaacgggtttgttgtta-tagagaatagatctcaacat 1860

                                         
Query: 924  cccctttgattcgaaagttgttacgttac 952
            |||||| |||||||||  | |||||||||
Sbjct: 1861 ccccttcgattcgaaatgttttacgttac 1889


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5821
Number of Sequences: 1807
Number of extensions: 5821
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)