BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZG07FM1.SCF screened BAC_end
         (923 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1699                                                        1281   0.0  

>3x_Contig1699 
          Length = 18038

 Score = 1281 bits (646), Expect = 0.0
 Identities = 709/723 (98%), Gaps = 6/723 (0%)
 Strand = Plus / Plus

                                                                        
Query: 87   aaagatatgtgctgattatccacaaatatatcgtgaatgtaattctcaaagatggtaggt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2860 aaagatatgtgctgattatccacaaatatatcgtgaatgtaattctcaaagatggtaggt 2919

                                                                        
Query: 147  tcgtacaccttagggaaatatcccctggtgaaaacatttaaaagagaagtcttaccacaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2920 tcgtacaccttagggaaatatcccctggtgaaaacatttaaaagagaagtcttaccacaa 2979

                                                                        
Query: 207  gcaccatctcctaatatgactattttacgctcaattggctgcttgcttgaagaaccacca 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2980 gcaccatctcctaatatgactattttacgctcaattggctgcttgcttgaagaaccacca 3039

                                                                        
Query: 267  cagagaggcatcttgtttttggaaatccttatccaaaaattaacaacgatataaaaccag 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3040 cagagaggcatcttgtttttggaaatccttatccaaaaattaacaacgatataaaaccag 3099

                                                                        
Query: 327  aaaaaagaaaatttcttggaacttccgctctttgaaccgatcagcaccacaatccctcaa 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3100 aaaaaagaaaatttcttggaacttccgctctttgaaccgatcagcaccacaatccctcaa 3159

                                                                        
Query: 387  gcacctgaattgaacctcggttatctactagaaagttgactcgctcactaactgtactgc 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3160 gcacctgaattgaacctcggttatctactagaaagttgactcgctcactaactgtactgc 3219

                                                                        
Query: 447  cggtatcctgcttactattcgcggcaactatgtgtattctctatgtgttgcgggaagcgt 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3220 cggtatcctgcttactattcgcggcaactatgtgtattctctatgtgttgcgggaagcgt 3279

                                                                        
Query: 507  tcaggttntggatttcaaattgaaatgaattcctgttttctcatctgattatgaaacttn 566
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 3280 tcaggttttggatttcaaattgaaatgaattcctgttttctcatctgattatgaaacttt 3339

                                                                        
Query: 567  tacaccgagaagaggaatgtaatatgtgctgtacgggtgttgaaatggagaat-aatact 625
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3340 aacaccgagaagaggaatgtaatatgtgctgtacgggtgttgaaatggagaataaatact 3399

                                                                        
Query: 626  tattgatgtgaaagaattgggatacattggattaacggnaggccaaacaagatctatggg 685
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 3400 tattgatgtgaaagaattgggatacattggattaacggaaggccaaacaagatctat-gg 3458

                                                                        
Query: 686  tgaatcaactattgctgacactacctggattagagcagagattttcgaatggtgttaagg 745
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 3459 tgaatcaactattgctgacactacctggattagagcagaga-tttcgaatggtgttaatg 3517

                                                                        
Query: 746  ggacccaatttttattttcgtagaggttttttagatagctgtttaagtccgggtaataac 805
            |||||||||||||| ||||||||  || | |||||||||||||| |||||||||||||||
Sbjct: 3518 ggacccaattttta-tttcgtag-tgtatattagatagctgttt-agtccgggtaataac 3574

               
Query: 806  ctt 808
            |||
Sbjct: 3575 ctt 3577


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6998
Number of Sequences: 1807
Number of extensions: 6998
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)