BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG07RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1203 1312 0.0
>3x_Contig1203
Length = 4988
Score = 1312 bits (662), Expect = 0.0
Identities = 785/816 (96%), Gaps = 8/816 (0%)
Strand = Plus / Plus
Query: 45 cttgacattacgaggctggacatcccgatatcaattaatagacctttactcttttgggaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 cttgacattacgaggctggacatcccgatatcaattaatagacctttactcttttgggaa 3727
Query: 105 agggagaaaattgaataggtttagtggcaatggcggttaaaatccctaaatgaaggtagg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 agggagaaaattgaataggtttagtggcaatggcggttaaaatccctaaatgaaggtagg 3787
Query: 165 gaaggaggcttatcttgcagacaagaaaatacattgtagagcagggaaacttaatacatt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788 gaaggaggcttatcttgcagacaagaaaatacattgtagagcagggaaacttaatacatt 3847
Query: 225 ttttgctccttcggattcagatgcccaaataagtctggaaagatgacatatcactttaaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3848 ttttgctccttcggattcagatgcccaaataagtctggaaagatgacatatcactttaaa 3907
Query: 285 ataccatatcgatacgtaactgtgcattcttttataggttactatcgtgtatagtagttt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 ataccatatcgatacgtaactgtgcattcttttataggttactatcgtgtatagtagttt 3967
Query: 345 tatagatcatggttctccattatgttggtnacggagaagcagtgagtaacttaaggaagt 404
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3968 tatagatcatggttctccattatgttggt-acggagaagcagtgagtaacttaaggaagt 4026
Query: 405 aatttgtcatgcgcgatgcatcgatcttccagcatttttgtgctttaagttcattagtta 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4027 aatttgtcatgcgcgatgcatcgatcttccagcatttttgtgctttaagttcattagtta 4086
Query: 465 gcctgtaaatcanattcttagtgtattaatccagaagaatcttctcactttgcaggttac 524
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 4087 gcctgtaaatcaaattcttagtgtattaatccagaggaatcttctcactttgcaggttac 4146
Query: 525 ggaaagagaagttcattcattgtgagcacctcgactaggatt-aacggtgaatccaaagg 583
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4147 gg-aagagaagttcattcattgtgagcacctcgactaggattaaacggtgaatccaaagg 4205
Query: 584 tgatttgcaacagattcctaatttaccgatgcatagcagtcatgcgtcgtcc-ataattt 642
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4206 tgatttgcaacagaatcctaatttaccgatgcatagcagtcatgcgtcgtccaataatta 4265
Query: 643 acatattgtcgtacttcatcc-atttacacataaatgattcatttactgccattaagggg 701
||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct: 4266 acatattgtcgtacttcatccaatttacacataaatgattcatttactgccataaggggg 4325
Query: 702 gcagggcgtttctactgaagcttttaaaggaaattcgg-attatctatttgggt-agttt 759
|||||||||||||||||||||| ||||||||||||||| ||||||||| | ||| |||||
Sbjct: 4326 gcagggcgtttctactgaagctattaaaggaaattcggtattatctatatcggtaagttt 4385
Query: 760 agccgccctattttcttggaaaattttcc-ttcaattggtgtagcccaactggggggaag 818
||||||| |||||||||| |||||||||| |||| ||| ||||||| ||||| |||||||
Sbjct: 4386 agccgccatattttcttgaaaaattttcctttcagttgttgtagccaaactgtggggaag 4445
Query: 819 ggaaaactttgggccnaaaccatcccaatgtttacc 854
||| |||| ||| | || | ||| |||||||||||
Sbjct: 4446 ggagaactatggtcagaagcgatcgcaatgtttacc 4481
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5451
Number of Sequences: 1807
Number of extensions: 5451
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)