BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG08FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1176 0.0
>3x_Contig1718
Length = 19496
Score = 1176 bits (593), Expect = 0.0
Identities = 683/705 (96%), Gaps = 6/705 (0%)
Strand = Plus / Plus
Query: 87 ttagaggcgcatattccttattaagtttttgatataaatcatttataattgttttcacct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10620 ttagaggcgcatattccttattaagtttttgatataaatcatttataattgttttcacct 10679
Query: 147 tgtctgggtctcgcctctttgcgtgcctattctttctgatttcggtgttctgcctgtcat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10680 tgtctgggtctcgcctctttgcgtgcctattctttctgatttcggtgttctgcctgtcat 10739
Query: 207 ggttcactatttgttcctttgatgttaccttagtattcatcaccaaggatttaacatcca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10740 ggttcactatttgttcctttgatgttaccttagtattcatcaccaaggatttaacatcca 10799
Query: 267 actgcgaaaaaagtctggtgcattgtttcatagttgtgtcgtcccacctacgtgatcagg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10800 actgcgaaaaaagtctggtgcattgtttcatagttgtgtcgtcccacctacgtgatcagg 10859
Query: 327 cgttattgtatcttgaaagcatgtatggtgtccatatcattgttgttttattgatccaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10860 cgttattgtatcttgaaagcatgtatggtgtccatatcattgttgttttattgatccaga 10919
Query: 387 tttgatatactaactaactaaactgggtagaaaattttcttaagaaagagtgagatcaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10920 tttgatatactaactaactaaactgggtagaaaattttcttaagaaagagtgagatcaac 10979
Query: 447 agaagttaaagggtatctatctacaaaaaaaaatgaaataaaagatagaaaggtatctaa 506
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10980 agaagttaaagggtatctatctacaaaaaaaaatgaaataaaagaaagaaaggtatctaa 11039
Query: 507 agcagcccgaactttgtaacacaatattccacattgtggctaattttcaagtatgtatat 566
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11040 agcagcccgaactttgtaacacaatattccacaatgtggctaattttcaagtatgtatat 11099
Query: 567 ttagatagttttttcaattaaaagtttccagaaagtttactcttattatttatcg-acaa 625
||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct: 11100 ttagatagttttttcaattaaaagtttccagaaagtttactctaatta-ttatcgaacaa 11158
Query: 626 gccggcgagaacgtcacctttttaaattagggtccttaagcattgttcgattccggtttt 685
|||| ||||||||||||| || |||||||||||||| ||||| ||||||||||||| |||
Sbjct: 11159 gccgccgagaacgtcacc-ttctaaattagggtcctcaagca-tgttcgattccgg-ttt 11215
Query: 686 atttttcccttattatttgctcaccaactctagctaggatagcctctcttctctctttaa 745
||||||||| || || |||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 11216 atttttccc-tagtaattgctcaccagctctagctaggatagcttctcttctctctttag 11274
Query: 746 tttttgcttcatgatccgcgggggaatgagagtcattttggtcac 790
|||||||||||||||| |||| | | |||||||||| ||||||||
Sbjct: 11275 tttttgcttcatgatctgcggtgaagtgagagtcatcttggtcac 11319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7675
Number of Sequences: 1807
Number of extensions: 7675
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)