BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZG08RM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1739                                                        1217   0.0  

>3x_Contig1739 
          Length = 22061

 Score = 1217 bits (614), Expect = 0.0
 Identities = 774/812 (95%), Gaps = 13/812 (1%)
 Strand = Plus / Plus

                                                                         
Query: 44    gctttacattggaaatattcaaatgtttttttctctggattttagttgtttttttttcga 103
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9440  gctttacattggaaatattcaaatgtttttttctctggattttagttgtttttttttcga 9499

                                                                         
Query: 104   cctttgacgattttctgtattttttcgaaaagttaatagtcaattttgtcttttactagt 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9500  cctttgacgattttctgtattttttcgaaaagttaatagtcaattttgtcttttactagt 9559

                                                                         
Query: 164   atgaaatgccaattgtgtcacgtacagagctgacaattaaacttaaatcatatttatatg 223
             |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct: 9560  atgaaatgccaattgtgtcacgtacagagctgacaattaaacttaaatcataattaca-g 9618

                                                                         
Query: 224   gttttagaatacatatgaaactccccgaatgttttttttattatattgacaaatgacacg 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9619  gttttagaatacatatgaaactccccgaatgttttttttattatattgacaaatgacacg 9678

                                                                         
Query: 284   acgaaggtccaattttttgctatgtaaaaattatatacatttttgatcgatgaagaaaaa 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9679  acgaaggtccaattttttgctatgtaaaaattatatacatttttgatcgatgaagaaaaa 9738

                                                                         
Query: 344   aagtctctagaagtggacgaatttctgggcaaagattctcatggccatcttcagcgctct 403
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9739  aagtctctagaagtggacgaatttctgggcaaag-ttctcatggccatcttcagcgctct 9797

                                                                         
Query: 404   taccgatcttaatatatttatcattttntatgttttccttaatatcggggtgaagtgcta 463
             ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 9798  taccgatcttaatatatttatcattttttatgttttccttaatatcgtggtgaagtgcta 9857

                                                                         
Query: 464   ttaagtaattatcaaagctttcgaccaactcgatggatttatcctcaaccatcagttggt 523
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9858  ttaagtaattatcaaagctttcgaccaactcgatggatttatcctcaaccatcagttggt 9917

                                                                         
Query: 524   tcatcacatgagaataat-aggatccacgttaggtctcaatgggacaactgggagatagt 582
             |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 9918  tcatcacatgagaataataaggatccacgttaggtctcaatgggacaactggaagatagt 9977

                                                                         
Query: 583   ctatatttatgatttgactccaatttttgatcacattgcgggccttgatattttatatcg 642
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9978  ctatatttatgatttgactccaatttttgatcacattgcgggccttgata-tttatatcg 10036

                                                                         
Query: 643   gtgtctaaatctggc-acctgcca-cgaatttatccagtttgttgaattggtccctcgta 700
             ||||||||||||||| |||||||| ||||| ||||||||| |||| ||||||||||||||
Sbjct: 10037 gtgtctaaatctggcaacctgccaccgaatatatccagttggttg-attggtccctcgta 10095

                                                                         
Query: 701   tgataacaattcacgtatttaacataggaattggggtttcattccattccttggaaaaca 760
             ||||||||| ||||||| |||||||| || ||| | ||||||||   ||| | | |||||
Sbjct: 10096 tgataacaaatcacgta-ttaacataagatttgtgttttcattc--atccataggaaaca 10152

                                                                         
Query: 761   ggattcacctttggaaaattaggtaaacgcc-ccctttatcaattgccgatgacttaaac 819
              |||||||| ||||||||||||||||  ||| || ||||||||||||||||||||  |||
Sbjct: 10153 agattcacc-ttggaaaattaggtaacagccaccatttatcaattgccgatgactagaac 10211

                                             
Query: 820   gtactggataaggtttctttttttttgaattg 851
             ||||| |||||||||||| | || ||||||||
Sbjct: 10212 gtact-gataaggtttctatattattgaattg 10242


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9899
Number of Sequences: 1807
Number of extensions: 9899
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)