BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG09FM1.SCF screened BAC_end
(957 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1685 1530 0.0
>3x_Contig1685
Length = 14400
Score = 1530 bits (772), Expect = 0.0
Identities = 852/870 (97%), Gaps = 7/870 (0%)
Strand = Plus / Plus
Query: 88 aacctggaacttacaagataagatttcatacaggcaactacttcaaacagaaaaaggaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12027 aacctggaacttacaagataagatttcatacaggcaactacttcaaacagaaaaaggaac 12086
Query: 148 ccagctttttccccttcgttgacatcgttttcgaagtttctgacactagacactaccata 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12087 ccagctttttccccttcgttgacatcgttttcgaagtttctgacactagacactaccata 12146
Query: 208 ttccgttgctattgagtaactacggatattcaacttaccgtggttcttaaatgtgacaac 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12147 ttccgttgctattgagtaactacggatattcaacttaccgtggttcttaaatgtgacaac 12206
Query: 268 aataggtcaatataactatttctcggctctctgttgcgtgttgaatacttcaaacatatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12207 aataggtcaatataactatttctcggctctctgttgcgtgttgaatacttcaaacatatt 12266
Query: 328 gagctttgtcagttctcatatatatccgtatctatcaatataaatgtggagcagtgatcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12267 gagctttgtcagttctcatatatatccgtatctatcaatataaatgtggagcagtgatcc 12326
Query: 388 ctcacgtgatttagcttcaacactttttttcatcagacaaaactcacgtcgtcggcgata 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12327 ctcacgtgatttagcttcaacactttttttcatcagacaaaactcacgtcgtcggcgata 12386
Query: 448 cgagaaaaaaatgaacgttttacttatgatttcaataagaccgaaggggatttagaatca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12387 cgagaaaaaaatgaacgttttacttatgatttcaataagaccgaaggggatttagaatca 12446
Query: 508 acaaatgggaatttgaagcacttcacagcagttttacaactttgaatgacgaaattacgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12447 acaaatgggaatttgaagcacttcacagcagttttacaactttgaatgacgaaattacgt 12506
Query: 568 taatgggttattgcgacatttagtgtactatatttttccgtttagttgttgttcttattt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12507 taatgggttattgcgacatttagtgtactatatttttccgtttagttgttgttcttattt 12566
Query: 628 tcgtatcgagtttttttgttgcctaaatcacagtgtcggaccaaagatttccatacaact 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12567 tcgtatcgagtttttttgttgcctaaatcacagtgtcggaccaaagatttccatacaact 12626
Query: 688 gttctgcctacttt-attaatcaaatagagacactatgggtctttctatcgagcanaagt 746
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 12627 gttctgcctactttaattaatcaaatagagacactatgggtctttctatcgagcaaaagt 12686
Query: 747 ataatatttgtcttatggctgaaaagcatccgaaatggactcatgccgaattggcgcaat 806
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12687 ataatatttgtcttatggctgaaaagcatccgaaatggactcaggccgaattggcgcaat 12746
Query: 807 gggcatatcaggttttatcagccttccatcgaagcccctctcaaggaacgatttctcgac 866
|||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct: 12747 gggcatatcagg-tttatcag-cttccatcgaag-ccctctcaaggaacgatatctcgac 12803
Query: 867 tggtggcaaaaaaaagcgagttcatgaattagtagggagc-tgaaagggattcnattagc 925
|| ||||||||||||||||||||||||| ||||| ||||| ||||| |||||| | |||
Sbjct: 12804 tgttggcaaaaaaaagcgagttcatgaa-tagtaaggagcatgaaaaggattccaatagg 12862
Query: 926 cttcgacgtcct-ataacctgtttgtgcat 954
|||||||||||| ||||| |||| ||||||
Sbjct: 12863 cttcgacgtcctaataacttgttggtgcat 12892
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6425
Number of Sequences: 1807
Number of extensions: 6425
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 957
length of database: 10,358,551
effective HSP length: 16
effective length of query: 941
effective length of database: 10,329,639
effective search space: 9720190299
effective search space used: 9720190299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)