BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG09RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 632 0.0
>3x_Contig1705
Length = 16734
Score = 632 bits (319), Expect = 0.0
Identities = 332/335 (99%), Gaps = 1/335 (0%)
Strand = Plus / Minus
Query: 44 cttctctaattgcggttcgctcct-tataaatccggagtttcaatcaactcgctataaag 102
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 336 cttctctaattgcggttcgctccaatataaatccggagtttcaatcaactcgctataaag 277
Query: 103 gtttaatttacctctcatcaaaaacaaccttccagtggattgtaacacagctttttcact 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtttaatttacctctcatcaaaaacaaccttccagtggattgtaacacagctttttcact 217
Query: 163 gatattcaatttcttacctcgggataaagactccgtgaactctcttgtcttttttatatg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 216 gatattcaatttcttacctcgggataaagactccgtgaactctcttgtcttttctatatg 157
Query: 223 cgcatccaaggcaacttcaagtacagctaatctcgtgcttctggatataccgctagaaaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cgcatccaaggcaacttcaagtacagctaatctcgtgcttctggatataccgctagaaaa 97
Query: 283 tgccgccttatctaacagagctttctcatgttccacgccattgatgattataagttcgtt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tgccgccttatctaacagagctttctcatgttccacgccattgatgattataagttcgtt 37
Query: 343 tgtaacgcagctctcgtcattaatcgaataatcac 377
|||||||||||||||||||||||||||||||||||
Sbjct: 36 tgtaacgcagctctcgtcattaatcgaataatcac 2
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5576
Number of Sequences: 1807
Number of extensions: 5576
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)