BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZG10RM1.SCF screened BAC_end
         (897 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1738                                                        1094   0.0  

>3x_Contig1738 
          Length = 21411

 Score = 1094 bits (552), Expect = 0.0
 Identities = 609/621 (98%), Gaps = 6/621 (0%)
 Strand = Plus / Plus

                                                                         
Query: 40    cttctgctgttatcctagttcctgtctcacatcccaacccagctcccagcttcatctgct 99
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18923 cttctgctgttatcctagttcctgtctcacatcccaacccagctcccagcttcatctgct 18982

                                                                         
Query: 100   ttcccatcgtctcatctctctttccaatcacaccacatataaacttcgtctcgagcttcg 159
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18983 ttcccatcgtctcatctctctttccaatcacaccacatataaacttcgtctcgagcttcg 19042

                                                                         
Query: 160   attctttgctttttttgtgcagcaccttctatggaaaaagaaagagcaaggctggtgaaa 219
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19043 attctttgctttttttgtgcagcaccttctatggaaaaagaaagagcaaggctggtgaaa 19102

                                                                         
Query: 220   aagaaatattcagcatgggaaatctggcgatgtcatctgacactcgtcgcagcccaacag 279
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19103 aagaaatattcagcatgggaaatctggcgatgtcatctgacactcgtcgcagcccaacag 19162

                                                                         
Query: 280   aaaacgggtattctagcaagtgtctatggagctaccaccatgcaatacgaagaatcgccg 339
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19163 aaaacgggtattctagcaagtgtctatggagctaccaccatgcaatacgaagaatcgccg 19222

                                                                         
Query: 340   aatcgtgtttattttgtactgacggtgctttgcatgggtacattttggtatgtatggtct 399
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19223 aatcgtgtttattttgtactgacggtgctttgcatgggtacattttggtatgtatggtct 19282

                                                                         
Query: 400   ctgggacggaaaaactaaaagtggaacccggaccagatagtatcggaaggatgattgtga 459
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19283 ctgggacggaaaaactaaaagtggaacccggaccagatagtatcggaaggatgattgtga 19342

                                                                         
Query: 460   tgataatacgttgtgtggttcagttgggtaggtatggctgttgcattat-tatagacaat 518
             ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 19343 tgataatacgttgtgtggttcagttgggtaggtatggctgttgcattatatatagacaat 19402

                                                                         
Query: 519   atgtctcgnccttttttttgtttttgttttctttggcattgactggttgtactactctta 578
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19403 atgtctcgtccttttttttgtttttgttttctttggcattgactggttgtactactctta 19462

                                                                         
Query: 579   tttg-agagtctcaaggnttagta-tcttcgatcaagatt-aagtngag-aaccctccga 634
             |||| |||||||||||| |||||| ||| ||||||||||| |||| ||| ||||||| ||
Sbjct: 19463 tttgaagagtctcaaggtttagtattctacgatcaagattaaagtagagaaaccctcgga 19522

                                  
Query: 635   ttcgggttt-ctaaatgttaa 654
             |||| |||| |||||||||||
Sbjct: 19523 ttcgtgtttcctaaatgttaa 19543


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7613
Number of Sequences: 1807
Number of extensions: 7613
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)