BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG11FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig717 1130 0.0
>3x_Contig717
Length = 3533
Score = 1130 bits (570), Expect = 0.0
Identities = 611/623 (98%), Gaps = 2/623 (0%)
Strand = Plus / Minus
Query: 86 caagcctcttcttgcagacaaagactgtttagccttttgtagatgtggctgaccttgtga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1665 caagcctcttcttgcagacaaagactgtttagccttttgtagatgtggctgaccttgtga 1606
Query: 146 aagccttggttgatttggcattacaacgcccccagcagcagcaggcggtctgaaagtacc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 aagccttggttgatttggcattacaacgcccccagcagcagcaggcggtctgaaagtacc 1546
Query: 206 tgctgctgcctgagaacctcccacgccaccaattggacttggcgcaccagcattgccgct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 tgctgctgcctgagaacctcccacgccaccaattggacttggcgcaccagcattgccgct 1486
Query: 266 gccagtacaactgggaacaccttgcggacgttttggagcctttctaatcggattgagttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 gccagtacaactgggaacaccttgcggacgttttggagcctttctaatcggattgagttc 1426
Query: 326 atgatcctgttgttgcttattactggcactaccagaagattccgaagcagatgacatacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 atgatcctgttgttgcttattactggcactaccagaagattccgaagcagatgacatacc 1366
Query: 386 gtcagactgtatactcaaattcgccagagcctcttgtgtctgcttctcaaactgtccctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 gtcagactgtatactcaaattcgccagagcctcttgtgtctgcttctcaaactgtccctt 1306
Query: 446 cttttcctctatatcgggaagttctgtcttatgagacagcagcaggcccccctgctgctg 505
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1305 cttttcctctatatcgggaagttctgtcttaggagacagcagcaggcccccctgctgctg 1246
Query: 506 ttgctgctgatcatgctggtcattttccgtaactgattgtgctaacaattccgtatgctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 ttgctgctgatcatgctggtcattttccgtaactgattgtgctaacaattccgtatgctg 1186
Query: 566 tagatgctgtagatgctggtcctgttgntttaggatcggttgtcgntgttgttgctgttg 625
||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct: 1185 tagatgctgtagatgctggtcctgttgttttaggaacggttgtcgttgttgttgctgttg 1126
Query: 626 ggtttgctggatttgtatattatgttgttgntggtggttgttgttctaattgctgggcta 685
|||||||| |||||||||||||||||||| | || ||||||||||||| |||| |||||
Sbjct: 1125 tgtttgctgtatttgtatattatgttgttgtt-gttgttgttgttctaagtgct-ggcta 1068
Query: 686 ttcttagcctcttcaaccattgt 708
|||| ||||||||||||||||||
Sbjct: 1067 ttctcagcctcttcaaccattgt 1045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7030
Number of Sequences: 1807
Number of extensions: 7030
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)