BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZG11RM1.SCF screened BAC_end
(874 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1015 513 e-145
3x_Contig1806 307 2e-83
3x_Contig1745 186 5e-47
>3x_Contig1015
Length = 4152
Score = 513 bits (259), Expect = e-145
Identities = 291/298 (97%), Gaps = 3/298 (1%)
Strand = Plus / Minus
Query: 49 aaccagagcattagctttttgtaaccatgggaactcgacaggagtaccagactggttgac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4041 aaccagagcattagctttttgtaaccatgggaactcgacaggagtaccagactggttgac 3982
Query: 109 aattacagtgttagggttatgcctccaatacagcacgaactagatcgtttgttcttgctg 168
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3981 aattacagtgttagggtta-gcctccaatacagcacgaactagatcgtttgttcttgctg 3923
Query: 169 gcaacgtcatatcttccctatcatggccctcagattcccattcagcattcaaaccgatgc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3922 gcaacgtcatatcttccctatcatggccctcagattcccattcagcattcaaaccgatgc 3863
Query: 229 ataaaatggctttatcatgagcggctgcaagctttgctgctntcttgatttcctcatctg 288
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 3862 ataaaatggctttatcatgagcggctgcaagctttgctgctttcttgatttcctcatctg 3803
Query: 289 catcaatagctttggtgacaccaaccctgagagcaccangatccgaatttcactcacc 346
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||
Sbjct: 3802 catcaatagctttggtgacaccaacctgaagagcacca-gatccgaa-ttcactcacc 3747
>3x_Contig1806
Length = 53694
Score = 307 bits (155), Expect = 2e-83
Identities = 245/274 (89%), Gaps = 1/274 (0%)
Strand = Plus / Minus
Query: 53 agagcattagctttttgtaaccatgggaactcgacaggagtaccagactggttgacaatt 112
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 52081 agagctttagctttttgtaatcatgggaactcgacaggagtaccagactggttgacaatt 52022
Query: 113 acagtgttagggttatgcctccaatacagcacgaactagatcgtttgttcttgctggcaa 172
||||||||||| || |||||||| |||||||| || ||||||||||||||| |||||||
Sbjct: 52021 acagtgttaggattg-gcctccaaaacagcacggacgagatcgtttgttcttcctggcaa 51963
Query: 173 cgtcatatcttccctatcatggccctcagattcccattcagcattcaaaccgatgcataa 232
|||||||||||||||||||| || |||||||||||||| || |||||||| || |||||
Sbjct: 51962 agtcatatcttccctatcatgaccttcagattcccattctgcgttcaaaccaatacataa 51903
Query: 233 aatggctttatcatgagcggctgcaagctttgctgctntcttgatttcctcatctgcatc 292
|||||||||||| ||| | || ||||| |||||||| ||||||||||||||||||||||
Sbjct: 51902 aatggctttatcgtgacccgcagcaagttttgctgccttcttgatttcctcatctgcatc 51843
Query: 293 aatagctttggtgacaccaaccctgagagcacca 326
|||||| || | ||||||||| ||||||||||
Sbjct: 51842 aatagcctttgcaacaccaacctggagagcacca 51809
>3x_Contig1745
Length = 19830
Score = 186 bits (94), Expect = 5e-47
Identities = 193/225 (85%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 89 ggagtaccagactggttgacaattacagtgttagggttatgcctccaatacagcacgaac 148
||||||||||||||||||| || ||||||||||| || ||||| || |||||||| ||
Sbjct: 62 ggagtaccagactggttgatgatgacagtgttaggattg-gcctctaagacagcacggac 120
Query: 149 tagatcgtttgttcttgctggcaacgtcatatcttccctatcatggccctcagattccca 208
||||||||||||||| ||||||| ||||||||||||||||||| || |||||||||||
Sbjct: 121 gagatcgtttgttcttcctggcaagatcatatcttccctatcatgaccttcagattccca 180
Query: 209 ttcagcattcaaaccgatgcataaaatggctttatcatgagcggctgcaagctttgctgc 268
||| || |||||||| || |||||||||||||| || ||| | || ||||| ||||||||
Sbjct: 181 ttctgcgttcaaaccaatacataaaatggctttgtcgtgacccgcagcaagttttgctgc 240
Query: 269 tntcttgatttcctcatctgcatcaatagctttggtgacaccaac 313
|| ||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 241 cttcctgatttcttcatctgcatcaatagccttggcaacaccaac 285
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 33,809
Number of Sequences: 1807
Number of extensions: 33809
Number of successful extensions: 3130
Number of sequences better than 1.0e-20: 3
length of query: 874
length of database: 10,358,551
effective HSP length: 16
effective length of query: 858
effective length of database: 10,329,639
effective search space: 8862830262
effective search space used: 8862830262
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)