BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZG12FM1.SCF screened BAC_end
         (942 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1185                                                        1074   0.0  

>3x_Contig1185 
          Length = 4803

 Score = 1074 bits (542), Expect = 0.0
 Identities = 769/825 (93%), Gaps = 25/825 (3%)
 Strand = Plus / Minus

                                                                        
Query: 88   tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4368 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 4309

                                                                        
Query: 148  ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4308 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 4249

                                                                        
Query: 208  gaattattcatcatttaccgctaaaaacttcatggttttgccccgaaacaccatcgaaag 267
            |||||||||||||||||||||| |||||||         |||||||||||||||||||||
Sbjct: 4248 gaattattcatcatttaccgct-aaaactt---------gccccgaaacaccatcgaaag 4199

                                                                        
Query: 268  tttggaaatctttgaaaattcgaccactaacaaaaccaatggttctctattgtgggttat 327
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 tttggaaatctttgacaattcgaccactaacaaaaccaatggttctctattgtgggttat 4139

                                                                        
Query: 328  ggatcatacgataactcaatttggttatagacttttacgaaaatggatatctaaaccact 387
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 4079

                                                                        
Query: 388  gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 4019

                                                                        
Query: 448  tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 3959

                                                                        
Query: 508  cgcactcaatagaatagcttatggtagtacatcaagataagaagtttattttctttccta 567
            ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |  |
Sbjct: 3958 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagttta-tttcttcctaa 3900

                                                                        
Query: 568  aacagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaac 627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3899 aacagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaac 3840

                                                                        
Query: 628  tgcatanagagaattcagcatttgcgc-aaacct-ctgtctattgttc-atattttgcaa 684
            |||||| ||||||||||||| |||||| |||||| ||||||||||||| |||||||||||
Sbjct: 3839 tgcataaagagaattcagca-ttgcgcaaaacctcctgtctattgttcaatattttgcaa 3781

                                                                        
Query: 685  aacttaaat-cattttttagtgctactgatcttcctcttttcctac-aatgatcaac-tc 741
            |||||| || ||||||||||||||||||||||||||||||| |||| |||||||||| ||
Sbjct: 3780 aacttagatgcattttttagtgctactgatcttcctctttttctacaaatgatcaacgtc 3721

                                                                        
Query: 742  gatgctgcttt-gattaagaatccc-ttaaaacgccatccaattcttt-atttgaataat 798
            ||||||||||| ||| |||| |||| | |||||| |||| |||||||| |||||||||| 
Sbjct: 3720 gatgctgctttggataaagattcccataaaaacgtcatcgaattctttaatttgaataag 3661

                                                                        
Query: 799  tttgattccccgaaagggc-tttgcacaa-ttttgaaactttgaggaatggaaaac-gag 855
            | ||||| |||| |||| | ||||||||| | | || || ||||||||  |||||| |||
Sbjct: 3660 tatgatttcccggaaggtcttttgcacaagtatagagacattgaggaagtgaaaacagag 3601

                                                         
Query: 856  ttttatgaccaactttaaaac-tctaaagggttttgaaaaggcct 899
            ||  ||||| ||||| ||||| || ||||||| ||||||||||||
Sbjct: 3600 ttagatgacgaacttcaaaacatcaaaagggtcttgaaaaggcct 3556


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7840
Number of Sequences: 1807
Number of extensions: 7840
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)