BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZG12FM1.SCF screened BAC_end (942 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1185 1074 0.0 >3x_Contig1185 Length = 4803 Score = 1074 bits (542), Expect = 0.0 Identities = 769/825 (93%), Gaps = 25/825 (3%) Strand = Plus / Minus Query: 88 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4368 tcctaacttgttcgatgcattacaaggtttagatttgaataatgaacttaaaagattgct 4309 Query: 148 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4308 ttctgtgttgcactcatatttatcaacttttgaaaatacaaaggtgctatattttgcttc 4249 Query: 208 gaattattcatcatttaccgctaaaaacttcatggttttgccccgaaacaccatcgaaag 267 |||||||||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct: 4248 gaattattcatcatttaccgct-aaaactt---------gccccgaaacaccatcgaaag 4199 Query: 268 tttggaaatctttgaaaattcgaccactaacaaaaccaatggttctctattgtgggttat 327 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4198 tttggaaatctttgacaattcgaccactaacaaaaccaatggttctctattgtgggttat 4139 Query: 328 ggatcatacgataactcaatttggttatagacttttacgaaaatggatatctaaaccact 387 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4138 ggatcatacgagaactcaatttggttatagacttttacgaaaatggatatctaaaccact 4079 Query: 388 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4078 gatagatttaaaatcgatccttgacaggcaagatgctatcacttgcattatgaaagaagt 4019 Query: 448 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4018 tcacagcatttttttcgaatccttcaacgaactactgagaaaaagcatagaccttgaacg 3959 Query: 508 cgcactcaatagaatagcttatggtagtacatcaagataagaagtttattttctttccta 567 ||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | | Sbjct: 3958 cgcactcaatagaatagcttatggtagtacatcaagaaaagaagttta-tttcttcctaa 3900 Query: 568 aacagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaac 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3899 aacagattgcaactttcgcatctcttttcaaatcacatcacactttcattcatgaccaac 3840 Query: 628 tgcatanagagaattcagcatttgcgc-aaacct-ctgtctattgttc-atattttgcaa 684 |||||| ||||||||||||| |||||| |||||| ||||||||||||| ||||||||||| Sbjct: 3839 tgcataaagagaattcagca-ttgcgcaaaacctcctgtctattgttcaatattttgcaa 3781 Query: 685 aacttaaat-cattttttagtgctactgatcttcctcttttcctac-aatgatcaac-tc 741 |||||| || ||||||||||||||||||||||||||||||| |||| |||||||||| || Sbjct: 3780 aacttagatgcattttttagtgctactgatcttcctctttttctacaaatgatcaacgtc 3721 Query: 742 gatgctgcttt-gattaagaatccc-ttaaaacgccatccaattcttt-atttgaataat 798 ||||||||||| ||| |||| |||| | |||||| |||| |||||||| |||||||||| Sbjct: 3720 gatgctgctttggataaagattcccataaaaacgtcatcgaattctttaatttgaataag 3661 Query: 799 tttgattccccgaaagggc-tttgcacaa-ttttgaaactttgaggaatggaaaac-gag 855 | ||||| |||| |||| | ||||||||| | | || || |||||||| |||||| ||| Sbjct: 3660 tatgatttcccggaaggtcttttgcacaagtatagagacattgaggaagtgaaaacagag 3601 Query: 856 ttttatgaccaactttaaaac-tctaaagggttttgaaaaggcct 899 || ||||| ||||| ||||| || ||||||| |||||||||||| Sbjct: 3600 ttagatgacgaacttcaaaacatcaaaagggtcttgaaaaggcct 3556 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7840 Number of Sequences: 1807 Number of extensions: 7840 Number of successful extensions: 46 Number of sequences better than 1.0e-20: 1 length of query: 942 length of database: 10,358,551 effective HSP length: 16 effective length of query: 926 effective length of database: 10,329,639 effective search space: 9565245714 effective search space used: 9565245714 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)