BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH01FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1528 1247 0.0
>3x_Contig1528
Length = 10737
Score = 1247 bits (629), Expect = 0.0
Identities = 674/685 (98%), Gaps = 3/685 (0%)
Strand = Plus / Minus
Query: 87 caggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 caggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgt 2058
Query: 147 ttctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 ttctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgaga 1998
Query: 207 atgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 atgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatc 1938
Query: 267 tggtgttaacctctctgaagtgataagtttctccatctctataaattcctcagttggcac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 tggtgttaacctctctgaagtgataagtttctccatctctataaattcctcagttggcac 1878
Query: 327 cacagataatccgaattgcggtgcagcagagtaaatgatatcctttgtcaaatcttcagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 cacagataatccgaattgcggtgcagcagagtaaatgatatcctttgtcaaatcttcagg 1818
Query: 387 tgtcaatgatgtagagtaatgattttgatgacaatcgatatccttttcaataaggttgta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 tgtcaatgatgtagagtaatgattttgatgacaatcgatatccttttcaataaggttgta 1758
Query: 447 acctaaaacttctgcatgtctttgcaagtcctccaatgtcggttcattatcttttatcgt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 acctaaaacttctgcatgtctttgcaagtcctccaatgtcggttcattatcttttatcgt 1698
Query: 507 tgatgccagtgaaacattatcattatcagaaccaaggaaatcattggcatcggtataatg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 tgatgccagtgaaacattatcattatcagaaccaaggaaatcattggcatcggtataatg 1638
Query: 567 agtggaagatgtatgcatgcttgacttcgaagggctgtttctgaggttgaaggagctgct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 agtggaagatgtatgcatgcttgacttcgaagggctgtttctgaggttgaaggagctgct 1578
Query: 627 actttgtagcgcatcataataatcagtgtcacctgtgctttacag-attgaaactaacag 685
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 1577 actttgtagcgcatcataataatcagtgtcacctgtgc-ttacagaattgaaactaacag 1519
Query: 686 tggaatggttcacaggaggattgagatttaatgcaggccttaagcccttttcgccgacac 745
||||||||||||||| |||| |||||||||||||||||| |||| | ||||||||||
Sbjct: 1518 tggaatggttcacagagggatggagatttaatgcaggcctagagccataatcgccgacac 1459
Query: 746 gttgattattattgtttctcgagtt 770
||||||||||| |||||||||||||
Sbjct: 1458 gttgattatta-tgtttctcgagtt 1435
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8117
Number of Sequences: 1807
Number of extensions: 8117
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)