BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH01RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1596 0.0
>3x_Contig1589
Length = 10239
Score = 1596 bits (805), Expect = 0.0
Identities = 860/874 (98%), Gaps = 4/874 (0%)
Strand = Plus / Plus
Query: 46 cttataaggatgctggaattattactcacatcggtgccgctttctccagagatcaacctg 105
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6593 cttataaggatgctggaattatcactcacatcggtgccgctttctccagagatcaacctg 6652
Query: 106 aaaagatttacatccaagatcgtatcaaagaaaacttgccagagttgaagactgcaatga 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6653 aaaagatttacatccaagatcgtatcaaagaaaacttgccagagttgaagactgcaatga 6712
Query: 166 ttgacaatgaaggttccttctacttatgtggtccaacgtggcctgttcctgatattattc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 6713 ttgacaatgaaggttccttctacttatgtggtccaacgtggcctgttcctgatatcactc 6772
Query: 226 aagctctacaagatattattgctgcagatgcgaaggagaagggcatcaacgttgacttgg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6773 aagctctacaagatattattgctgcagatgcgaaggagaagggcatcaacgttgacttgg 6832
Query: 286 atgctgccattgaagacttaaaggaaacttctagatatatcctagaagtttactgatttt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6833 atgctgccattgaagacttaaaggaaacttctagatatatcctagaagtttactgatttt 6892
Query: 346 tttatgtgtttcgttgaatactgtttattatttatcaatctatttattttggtatatgag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6893 tttatgtgtttcgttgaatactgtttattatttatcaatctatttattttggtatatgag 6952
Query: 406 aatcattacataacactaactactgatgtaccatcttggaacctagttctaaacacccgg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6953 aatcattacataacactaactactgatgtaccatcttggaacctagttctaaacacccgg 7012
Query: 466 ttagcgttagtgaacataccttctttcaacgatacaacgataaattgggagcctttaaac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7013 ttagcgttagtgaacataccttctttcaacgatacaacgataaattgggagcctttaaac 7072
Query: 526 ctggttttaataagatgaccaatgttctgagtatgacttaaatctaatgcggcatccact 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7073 ctggttttaataagatgaccaatgttctgagtatgacttaaatctaatgcggcatccact 7132
Query: 586 tcatccaatatatacattggtgcaggtttgaactgcaacaatgcaaggatcaatgataac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7133 tcatccaatatatacattggtgcaggtttgaactgcaacaatgcaaggatcaatgataac 7192
Query: 646 gcaattagggaacgctgtccaccagagagttctaccagactctctttccaaattttacct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7193 gcaattagggaacgctgtccaccagagagttctaccagactctctttccaaattttacct 7252
Query: 706 aatttaactttaacttctaatccctcggttacatctttaccttctgaaag-tccaaattg 764
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 7253 aatttaactttaacttctaatccctcggttacatctttaccttctgaaggttccaatttg 7312
Query: 765 gcgaatgaattcgggagaagatcgccaaaaatatttccgaaatctacactgactttctcc 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7313 gcgaatgaattcgggagaagatcgccaaaaatatttccgaaatctacactgactttctcc 7372
Query: 825 catgtttttattaaag-ttctcgtttgtattcgntaaagcttttcnataggttccttgaa 883
|||||||||||||||| |||||||||||||||| | ||||||||| |||| |||| ||||
Sbjct: 7373 catgtttttattaaagtttctcgtttgtattcgtt-aagcttttcgatagtttcc-tgaa 7430
Query: 884 ttttctgcttatctttttcaagggntttaatcat 917
||||||||||||||||||||| || |||||||||
Sbjct: 7431 ttttctgcttatctttttcaatggttttaatcat 7464
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6862
Number of Sequences: 1807
Number of extensions: 6862
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)