BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH03FM1.SCF screened BAC_end
(984 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1411 0.0
>3x_Contig1807
Length = 66587
Score = 1411 bits (712), Expect = 0.0
Identities = 822/850 (96%), Gaps = 7/850 (0%)
Strand = Plus / Plus
Query: 88 atcgacacctttgactcccacaagactcaaaagttcaggtgcataaattgtgattgcatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5827 atcgacacctttgactcccacaagactcaaaagttcaggtgcataaattgtgattgcatt 5886
Query: 148 tgcaccagaccattgacccaaaatttggaccaaacatgcgataacaaagaacctgtatct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5887 tgcaccagaccattgacccaaaatttggaccaaacatgcgataacaaagaacctgtatct 5946
Query: 208 aacagatttgacaaaaattatctcttttaccatatcaaggtaaccagtgcctgacatagt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5947 aacagatttgacaaaaattatctcttttaccatatcaaggtaaccagtgcctgacatagt 6006
Query: 268 ctctttctcttgaataatctggtatctgatatcagcgacttcacctgcaatgaaagggtg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6007 ctctttctcttgaataatctggtatctgatatcagcgacttcacctgcaatgaaagggtg 6066
Query: 328 cgtttcggataaattacgcaatttggccaagtttataattgccttgtcatccttgcccat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6067 cgtttcggataaattacgcaatttggccaagtttataattgccttgtcatccttgcccat 6126
Query: 388 tttcattaaccatctcggactctcaatacaccatataaatgatccaaccaagataagtcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6127 tttcattaaccatctcggactctcaatacaccatataaatgatccaaccaagataagtcc 6186
Query: 448 tgcaagaacaattttgattgaagttggcgcgacccactgcaatctactggtattagagac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6187 tgcaagaacaattttgattgaagttggcgcgacccactgcaatctactggtattagagac 6246
Query: 508 atggagagctgtcccatagtttgcaaaatatgccaacataataccaaaatacacggcacc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6247 atggagagctgtcccatagtttgcaaaatatgccaacataataccaaaatacacggcacc 6306
Query: 568 ggcaaacagacatcctgtcaaacctctgatttgttntacagagacttccgatagataaac 627
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6307 ggcaaacagacatcctgtcaaacctctgatttgttttacagagacttccgatagataaac 6366
Query: 628 tggcccaatggtggttgtctggccgatggcaagaccttcgataagtcttcctgcatatan 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6367 tggcccaatggtggttgtctggccgatggcaagaccttcgataagtcttcctgcatatag 6426
Query: 688 gttgccgacattctttgatgttatttggataattgcccc-acgattcat-aaacacatac 745
| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct: 6427 ttgtccgacattctttgatgttatttggataattgccccaacgattcataaaacacaaac 6486
Query: 746 gccttgcaacgcctttattctaccaaatttctccacagtattcatatcttttcaagtacc 805
||||||||||||||||||||||||||||||||||||||||| |||| || | | |||||
Sbjct: 6487 gccttgcaacgcctttattctaccaaatttctccacagtatacatagctatcaaggtacc 6546
Query: 806 accgatggattccaactgaaccattggagtgatgttagactttcaaatttgccaaataag 865
|||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 6547 accgattgatcccaactgaaccattgaagtgatgttagac-ttcaaatttgccaaataag 6605
Query: 866 aacccgtacttgggttttggccgcccaaccaaactggttttggaaactggacctg-gcaa 924
|| || |||| ||||||| ||||| ||||||||||||| |||||||| |||||| ||||
Sbjct: 6606 -acgcggactt-ggttttgtccgccaaaccaaactggttctggaaact-gacctgtgcaa 6662
Query: 925 catacccgga 934
|| |||||||
Sbjct: 6663 cagacccgga 6672
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6275
Number of Sequences: 1807
Number of extensions: 6275
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 984
length of database: 10,358,551
effective HSP length: 16
effective length of query: 968
effective length of database: 10,329,639
effective search space: 9999090552
effective search space used: 9999090552
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)