BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH03RM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1441 0.0
>3x_Contig1807
Length = 66587
Score = 1441 bits (727), Expect = 0.0
Identities = 854/886 (96%), Gaps = 8/886 (0%)
Strand = Plus / Minus
Query: 37 acacaaccttaataattgttatgatcagggtttatctgtctgggttcattactaaaatac 96
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 59439 acacaagcttaataattgttatgatcaggggttatctgtctgggttcattactaaaatac 59380
Query: 97 tctgaagtggaacgaaacaatgcaacgaagaatagaaggtgatgactgtgcggtatgatt 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59379 tctgaagtggaacgaaacaatgcaacgaagaatagaaggtgatgactgtgcggtatgatt 59320
Query: 157 caatcagtttataattcgttatttcactaaacataaaattgactatatggaaagagagca 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59319 caatcagtttataattcgttatttcactaaacataaaattgactatatggaaagagagca 59260
Query: 217 ttgctcnacatatgggtgactggtaaccagacaccaagataaaaagaattgagcattgat 276
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59259 aggtcttacatatgggtgactggtaaccagacaccaagataaaaagaattgagcattgat 59200
Query: 277 agtgacctcatattgttgtggagatgttttattttagctcaactctcttgaagaaaccac 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59199 agtgacctcatattgttgtggagatgttttattttagctcaactctcttgaagaaaccac 59140
Query: 337 cttggtctctgcaagcttcttgatgggctttgattaatctttgagcagctaatggatcat 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59139 cttggtctctgcaagcttcttgatgggctttgattaatctttgagcagctaatggatcat 59080
Query: 397 caacttcggtaggttcttcccaggacaagtactcgttagtgtagtttgatttgaaatcag 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59079 caacttcggtaggttcttcccaggacaagtactcgttagtgtagtttgatttgaaatcag 59020
Query: 457 ttggaaggatatccaaacgcttaccgtaagcagtaacctttctccagtcacgatggacgt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59019 ttggaaggatatccaaacgcttaccgtaagcagtaacctttctccagtcacgatggacgt 58960
Query: 517 tgtacaaggaagatgagaagtaagcgaaacatctttggaattgcttgtaactcaatgggt 576
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58959 tgtacaaggaagaggagaagtaagcgaaacatctttggaattgcttgtaactcaatgggt 58900
Query: 577 cgttcaattgaggcttgaagtcaacgtaatccttccatgcttgttcatgatctttgcaaa 636
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 58899 cgttcaattgaggcttgaagtcaacgtaatccttccatgcttgttcaggatcttgcaaaa 58840
Query: 637 ccaagtcagttgctttcttgatagcattcaagaacttcttaaccttgacagggttttcag 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58839 ccaagtcagttgctttcttgatagcattcaagaacttcttaaccttgacagggttttcag 58780
Query: 697 ccaagaatttgtcattggcgatgtacaagatggtacagaaacaacaacatcccaaacatg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58779 ccaagaatttgtcattggcgatgtacaagatggtacagaaacaacaacatcccaaacatg 58720
Query: 757 caagttcgtcaattcttaacatcttaacgtccttttggatctctgccttttttccttcaa 816
|||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 58719 caagttcgtcaattctcaacatcttagcgtcc-tttggatctctgcc-tttttccttcaa 58662
Query: 817 gtattcttccaagttggaacttgttgcattacttttcattaccaccaccagcatcggatt 876
|||||||| |||||| |||||||||||| ||| |||| ||||| |||||||||| |||
Sbjct: 58661 gtattctt-caagtt-gaacttgttgca-tac-attcaataccaacaccagcatc-gatc 58607
Query: 877 ttacctttaatgaatgtatttggaaacgtttatatcacatttgaca 922
||||||| |||| |||||||||| |||||| ||| ||||| |||||
Sbjct: 58606 ttaccttcaatg-atgtatttggcaacgttcataccacatctgaca 58562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8278
Number of Sequences: 1807
Number of extensions: 8278
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)