BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZH04FM1.SCF screened BAC_end
         (913 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig887                                                         1080   0.0  

>3x_Contig887 
          Length = 3466

 Score = 1080 bits (545), Expect = 0.0
 Identities = 627/649 (96%), Gaps = 4/649 (0%)
 Strand = Plus / Plus

                                                                        
Query: 86   ctcattcctcttattaatttcccttttcgtcctcctatcgtagttccttgaatacatgta 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 ctcattcctcttattaatttcccttttcgtcctcctatcgtagttccttgaatacatgta 2262

                                                                        
Query: 146  ttcatccttccaactaaaagatttaacggtactaaaattgccccatttcttgtagaatac 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 ttcatccttccaactaaaagatttaacggtactaaaattgccccatttcttgtagaatac 2322

                                                                        
Query: 206  ttttacttcctgataacttgtacccgaatagccaaaagttggcagaagtaaatttgattc 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2323 ttttacttcctgataacttgtacccgaatagccaaaagttggcagaagtaaatttgattc 2382

                                                                        
Query: 266  cttgtatttttccatagaattaacatatccgatggaaacaatatcggcatccacagtatc 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2383 cttgtatttttccatagaattaacatatccgatggaaacaatatcggcatccacagtatc 2442

                                                                        
Query: 326  atcgacaacatctttgaacgctgccattccaagttttcgtccatttcttacctcatcgcc 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 atcgacaacatctttgaacgctgccattccaagttttcgtccatttcttacctcatcgcc 2502

                                                                        
Query: 386  tgctaattttgcgaatattttaccaccaatctgatataaccctgctggagaatcatcgat 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 tgctaattttgcgaatattttaccaccaatctgatataaccctgctggagaatcatcgat 2562

                                                                        
Query: 446  tcgactgtacattccaccgtcaaagaatttcaatagttcttcagttgttactcctgtcac 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 tcgactgtacattccaccgtcaaagaatttcaatagttcttcagttgttactcctgtcac 2622

                                                                        
Query: 506  tgagctattcacaacgttagagccatcagaatcgtaagcatcatctattgaatcatttaa 565
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 tgagctatccacaacgttagagccatcagaatcgtaagcatcatctattgaatcatttaa 2682

                                                                        
Query: 566  gatttgggcctttgtgtgcatcgta-cacgccctttcttgggcatctgataatacttcgt 624
            ||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 2683 gatttggtcc-ttgtgtgcatcgtaccacgctctttcttgggcatctgataatacttcgt 2741

                                                                        
Query: 625  atgcaccttttatttgggc-aatacttctgtagcctcttccatattggttcgggtcttaa 683
            ||||| || |||||||||| |||||||||||||||||||| |||||| ||| | ||||| 
Sbjct: 2742 atgcagctcttatttgggcaaatacttctgtagcctcttctatattgtttctgttcttat 2801

                                                             
Query: 684  aagga-gggacaaaaatggctttttaccgtaccctcgttttaaatcggt 731
             |||| || |||| ||||  ||||||| |||| ||||||||| ||||||
Sbjct: 2802 caggatggtacaataatgcttttttacggtacgctcgttttagatcggt 2850


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7346
Number of Sequences: 1807
Number of extensions: 7346
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)