BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZH04FM1.SCF screened BAC_end (913 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig887 1080 0.0 >3x_Contig887 Length = 3466 Score = 1080 bits (545), Expect = 0.0 Identities = 627/649 (96%), Gaps = 4/649 (0%) Strand = Plus / Plus Query: 86 ctcattcctcttattaatttcccttttcgtcctcctatcgtagttccttgaatacatgta 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2203 ctcattcctcttattaatttcccttttcgtcctcctatcgtagttccttgaatacatgta 2262 Query: 146 ttcatccttccaactaaaagatttaacggtactaaaattgccccatttcttgtagaatac 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2263 ttcatccttccaactaaaagatttaacggtactaaaattgccccatttcttgtagaatac 2322 Query: 206 ttttacttcctgataacttgtacccgaatagccaaaagttggcagaagtaaatttgattc 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2323 ttttacttcctgataacttgtacccgaatagccaaaagttggcagaagtaaatttgattc 2382 Query: 266 cttgtatttttccatagaattaacatatccgatggaaacaatatcggcatccacagtatc 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2383 cttgtatttttccatagaattaacatatccgatggaaacaatatcggcatccacagtatc 2442 Query: 326 atcgacaacatctttgaacgctgccattccaagttttcgtccatttcttacctcatcgcc 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2443 atcgacaacatctttgaacgctgccattccaagttttcgtccatttcttacctcatcgcc 2502 Query: 386 tgctaattttgcgaatattttaccaccaatctgatataaccctgctggagaatcatcgat 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2503 tgctaattttgcgaatattttaccaccaatctgatataaccctgctggagaatcatcgat 2562 Query: 446 tcgactgtacattccaccgtcaaagaatttcaatagttcttcagttgttactcctgtcac 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2563 tcgactgtacattccaccgtcaaagaatttcaatagttcttcagttgttactcctgtcac 2622 Query: 506 tgagctattcacaacgttagagccatcagaatcgtaagcatcatctattgaatcatttaa 565 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2623 tgagctatccacaacgttagagccatcagaatcgtaagcatcatctattgaatcatttaa 2682 Query: 566 gatttgggcctttgtgtgcatcgta-cacgccctttcttgggcatctgataatacttcgt 624 ||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct: 2683 gatttggtcc-ttgtgtgcatcgtaccacgctctttcttgggcatctgataatacttcgt 2741 Query: 625 atgcaccttttatttgggc-aatacttctgtagcctcttccatattggttcgggtcttaa 683 ||||| || |||||||||| |||||||||||||||||||| |||||| ||| | ||||| Sbjct: 2742 atgcagctcttatttgggcaaatacttctgtagcctcttctatattgtttctgttcttat 2801 Query: 684 aagga-gggacaaaaatggctttttaccgtaccctcgttttaaatcggt 731 |||| || |||| |||| ||||||| |||| ||||||||| |||||| Sbjct: 2802 caggatggtacaataatgcttttttacggtacgctcgttttagatcggt 2850 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7346 Number of Sequences: 1807 Number of extensions: 7346 Number of successful extensions: 65 Number of sequences better than 1.0e-20: 1 length of query: 913 length of database: 10,358,551 effective HSP length: 16 effective length of query: 897 effective length of database: 10,329,639 effective search space: 9265686183 effective search space used: 9265686183 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)