BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH04RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1287 0.0
>3x_Contig1755
Length = 22936
Score = 1287 bits (649), Expect = 0.0
Identities = 764/794 (96%), Gaps = 7/794 (0%)
Strand = Plus / Plus
Query: 45 cttgtgtttcttttttttccatttgatcactacaatcattatcaaattctccgtctagat 104
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 8767 cttgtgtttcttttttttccagttgatcactacaatcattatcaaattctccgtctagat 8826
Query: 105 ccaatgtcagagtggaaagtcgatcctgataacaggagaaggttgttacagttacaaaaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8827 ccaatgtcagagtggaaagtcgatcctgataacaggagaaggttgttacagttacaaaaa 8886
Query: 165 gttggtggaaacaagaaatgccttgactgtggggctcataatccacaatgggcctttttt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 8887 gttggtggaaacaagaaatgccttgactgtggggctcataatccacaatgggcctcgcct 8946
Query: 225 aaattcggtgttttcatttgtttggaatgtgccggtattcaccgaggattaggagtgcac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8947 aaattcggtgttttcatttgtttggaatgtgccggtattcaccgaggattaggagtgcac 9006
Query: 285 atctccttcgttagatccatcactatggatcagttcaaatcagacgaactagttagaatg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9007 atctccttcgttagatccatcactatggatcagttcaaatcagacgaactagttagaatg 9066
Query: 345 gaaaacggtggtaatgacaaatttactgagtatctggaagaccatgggattgattcgagt 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9067 gaaaacggtggtaatgacaaatttactgagtatctggaagaccatgggattgattcgagt 9126
Query: 405 ttacctcagaagttgaagtatgataacgttattgcttcggattataaagataaactaact 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9127 ttacctcagaagttgaagtatgataacgttattgcttcggattataaagataaactaact 9186
Query: 465 gctatctgtgaaagcanagaatgggaagaacctgatcgctctgattntgacccaacccag 524
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 9187 gctatctgtgaaagcaaagaatgggaagaacctgatcgctctgattttgacccaacccag 9246
Query: 525 cttacagcaactaactctaggtccggtacccctcagctaaatggttcattgtctgaaaaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9247 cttacagcaactaactctaggtccggtacccctcagctaaatggttcattgtctgaaaaa 9306
Query: 585 cttggctctgaagaagcagtaaaccaaagggag-ataatgaatcctatttcgctacactt 643
|||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||
Sbjct: 9307 cttggctctgaagaagcagtaaaccaaaaggagaaaaatgaatcctatttcgctacactc 9366
Query: 644 cgtgagataaacttacagaacccag-acatataccgncatcccaaggtggtaaatatcaa 702
|||||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct: 9367 ggtgagaaaaacttacagaaaccagaacatataccgccatcccaaggtggtaaatatcaa 9426
Query: 703 gttttc-gaaacacgcctatttttcaacataagaaaggaaattcagctgaaacctggctc 761
| |||| |||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 9427 ggtttcggaaacacgcctattattcaacataagaaaggaaatcaagctg-aacctggctc 9485
Query: 762 tacttaccttgacttttggaaaactttcaaagggacccgtttggcacttttcccaaaggt 821
||| ||||||||| ||||||||||||||||| ||||||| ||||||| |||| ||||||
Sbjct: 9486 tac-taccttgac-tttggaaaactttcaaaaggacccgcttggcac-tttcacaaaggg 9542
Query: 822 tgggggcctatttt 835
| ||||||||||||
Sbjct: 9543 ttggggcctatttt 9556
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7827
Number of Sequences: 1807
Number of extensions: 7827
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)