BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH05FM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1542 1552 0.0
>3x_Contig1542
Length = 13810
Score = 1552 bits (783), Expect = 0.0
Identities = 824/835 (98%), Gaps = 2/835 (0%)
Strand = Plus / Minus
Query: 86 tttaacctctctcttcaaatcagattccaatttatctttttgtgatggattattgacaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 tttaacctctctcttcaaatcagattccaatttatctttttgtgatggattattgacaca 5755
Query: 146 attctcatgtctctcataatacatatcaaaaatctcaaggccttcattgacctttttgaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5754 attctcatgtctctcataatacatatcaaaaatctcaaggccttcattgacctttttgaa 5695
Query: 206 gacacgatctatctcctgctggagttttctatgtgccattttgaacgtttagtatgcctc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5694 gacacgatctatctcctgctggagttttctatgtgccattttgaacgtttagtatgcctc 5635
Query: 266 tttgctgaggtaccttctaaggtttcgttataagtagatcggtaaaggtgacttttgtat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5634 tttgctgaggtaccttctaaggtttcgttataagtagatcggtaaaggtgacttttgtat 5575
Query: 326 atcctgcgatgaaaaaaagttaaaatacctcttttttggttatttcagaaagcactatct 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5574 atcctgcgatgaaaaaaagttaaaatacctcttttttggttatttcagaaagcactatct 5515
Query: 386 atagtggtaccgatcacccagaagttaacgggttattgtggtgctatttttgaccctctt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5514 atagtggtaccgatcacccagaagttaacgggttattgtggtgctatttttgaccctctt 5455
Query: 446 gccaggccaacttatattgttcctatgtatacatttatgccttttgtgaaaaatttttaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5454 gccaggccaacttatattgttcctatgtatacatttatgccttttgtgaaaaatttttaa 5395
Query: 506 aaattgaccttaactggaatttaagaggttgatgatgagatgagcttgttaaacgtggaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5394 aaattgaccttaactggaatttaagaggttgatgatgagatgagcttgttaaacgtggaa 5335
Query: 566 gatgattgttgatagacgtattgcatctatcaagagacatagttacttagaaaatgatac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5334 gatgattgttgatagacgtattgcatctatcaagagacatagttacttagaaaatgatac 5275
Query: 626 aaatgactaattgaaataagtggatgcaggcccatatgataatgctattccgaaatagct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5274 aaatgactaattgaaataagtggatgcaggcccatatgataatgctattccgaaatagct 5215
Query: 686 tattcaaggcgaatttcaaatcaaactccgctgtttgctctcttttaaagagagatgcat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5214 tattcaaggcgaatttcaaatcaaactccgctgtttgctctcttttaaagagagatgcat 5155
Query: 746 cagcgtctgtcgaagacgcatcataatgatccgataaacctaaataagtggatacaacag 805
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5154 cagcgtctgtcgaggacgcatcataaggatccgataaacctaaataagtggatacaacag 5095
Query: 806 ctgaagagttgaaagggacaatggtgttaaattcagtaccagtgaaa-tatcccattgta 864
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5094 ctgaggagttgaaagggacaatggtgttaaattcagtaccagtgaaattatcccattgta 5035
Query: 865 catattctgatttc-aaaaaagaattttcgttacaagtgcattcattttggcatt 918
||||||||||| || || || ||| |||||||||||||||| |||||||| ||||
Sbjct: 5034 catattctgatatcgaagaaggaagtttcgttacaagtgcagtcattttgtcatt 4980
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7544
Number of Sequences: 1807
Number of extensions: 7544
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)