BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH06FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig979 803 0.0
3x_Contig409 276 8e-74
>3x_Contig979
Length = 3913
Score = 803 bits (405), Expect = 0.0
Identities = 420/424 (99%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 244 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctttgtgccaaatgctccacatatggtcgctacagggtcgtacgatggagtagttagat 60
Query: 304 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtacgatattagaacgaaatcagataaaccacagacaactttggatcacggtcttcctg 120
Query: 364 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggaagatatcacagccatatctcctactcagcttgcatcgtgtggtggtaacgggttca 180
Query: 424 aagtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagtatgggacttgactagcgatagagccctttgtgaacgtcaaaatttcgcaaagacgg 240
Query: 484 tcacctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcacctgtttgaattacacaaatatgggagaagaatcaccaatgagttccgtactagttg 300
Query: 544 catcctcgcttgatggtcatgttaagatcttttccccgntggagaacttccaattcaagt 603
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 301 catcctcgcttgatggtcatgttaagatcttttccccgttggagaacttccaattcaag- 359
Query: 604 tttggctggaagtttatcaacgctgtgctaagttgtgcagtctcaccatgcgatgcgcaa 663
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 360 tttggctggaagtttagcaacgctgtgctaagttgtgcagtctcaccaggcgatgcgcaa 419
Query: 664 ggta 667
||||
Sbjct: 420 ggta 423
>3x_Contig409
Length = 2404
Score = 276 bits (139), Expect = 8e-74
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 88 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2266 cgtcgcatcctacgcatgtgacgaagtttcacgatcaggataacaagactttggtgacgg 2325
Query: 148 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2326 caaacgacgatagagtagtgagactatgggatgtttctcatgcttatgaacccactttac 2385
Query: 208 agttaactggagcatctga 226
|||||||||||||||||||
Sbjct: 2386 agttaactggagcatctga 2404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5377
Number of Sequences: 1807
Number of extensions: 5377
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)