BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH06RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1205 0.0
>3x_Contig1794
Length = 36744
Score = 1205 bits (608), Expect = 0.0
Identities = 710/736 (96%), Gaps = 6/736 (0%)
Strand = Plus / Plus
Query: 49 tttctcattttcgaacttcgtccagtagggataatctgtttcaaactccaaatccaaacc 108
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 23194 tttctcattttcgaacttcgcccagtagggataatctgtttcaaactccaaatccaaacc 23253
Query: 109 tttgtatctccaagcatgtagatatagctctaacgattctggagttggatcttttggcat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23254 tttgtatctccaagcatgtagatatagctctaacgattctggagttggatcttttggcat 23313
Query: 169 ttcttcgtcgcattcaggacatcgttcttgattttcattcaattgatcccagacatcatc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23314 ttcttcgtcgcattcaggacatcgttcttgattttcattcaattgatcccagacatcatc 23373
Query: 229 cagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttgagtcca 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23374 cagttcaacctcgaaccgcttccgtagcttttcgattctttcgtttgttagttgagtcca 23433
Query: 289 atctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaaggttata 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23434 atctggggtctcaataataaaccttgaccgtaatgggtacgttgagttatcaaggttata 23493
Query: 349 aaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttgatgtgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23494 aaacggatcgtttgtaatggggtgtccctgtcttgccaaatggatacgaatttgatgtgt 23553
Query: 409 tcttcccgtgaaaggtttgcataatacaattgattgatcagttacggcatcgtattccat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23554 tcttcccgtgaaaggtttgcataatacaattgattgatcagttacggcatcgtattccat 23613
Query: 469 taattcaaactcagtatgtgcgtctttcaaaggggataatggctctgatttaattttc-a 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 23614 taattcaaactcagtatgtgcgtctttcaaaggggataatggctctgatttaattttcaa 23673
Query: 528 gtcacaggtatagattggggatttatcaactgcagtttcaagaaattttccttttactct 587
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 23674 gtcacaggtatagattggggatttatcaactgcagtttcaggaaattttccttttactct 23733
Query: 588 agctagataatattntcttcatatcacgatctcttatcttagattgaactctgttagcat 647
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23734 agctagataatatt-tcttcatatcacgatctcttatcttagattgaactctgttagcat 23792
Query: 648 cgatgggatttttggccagaataagt-aacccgtatggatcttattcaaacgaatacttg 706
|||||||||||||||||||||||||| |||| | | |||||||| ||||||| || ||
Sbjct: 23793 cgatgggatttttggccagaataagtaaaccagaagtgatcttatccaaacgataacatg 23852
Query: 707 ggtgtacctggttattccaagaaattcttc-acagctcgggtaaagtattcctattaaaa 765
|||||| |||| ||| |||| ||| ||| ||||||||| |||||||||| ||| ||||
Sbjct: 23853 ggtgta-ctggatatcccaaagaatctttcaacagctcggttaaagtattcttataaaaa 23911
Query: 766 tatggccgtggggtgt 781
|| |||||| ||||||
Sbjct: 23912 ta-ggccgttgggtgt 23926
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,004
Number of Sequences: 1807
Number of extensions: 12004
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)