BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH07FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1024 755 0.0
>3x_Contig1024
Length = 3867
Score = 755 bits (381), Expect = 0.0
Identities = 419/429 (97%), Gaps = 2/429 (0%)
Strand = Plus / Plus
Query: 88 ctttctgatttttgcttgagatcggccggacttttgccaaacattgaaaacttgcttgtt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2426 ctttctgatttttgcttgagatcggccggacttttgccaaacattgaaaacttgcttgtt 2485
Query: 148 ctattcacggcttcatcggtggaattatgatgaatgagctggtctttcttttctgaagag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2486 ctattcacggcttcatcggtggaattatgatgaatgagctggtctttcttttctgaagag 2545
Query: 208 acaaaaaagctttccgctgtgctgttggacttaaataattttgtatacccgtccttcaag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 acaaaaaagctttccgctgtgctgttggacttaaataattttgtatacccgtccttcaag 2605
Query: 268 gcataaagattttgaaagtctagatacaccttcttttctttgtcatagtatagactatta 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 gcataaagattttgaaagtctagatacaccttcttttctttgtcatagtatagactatta 2665
Query: 328 gcaagaaaagatgcatattctgatttccccaagataatctcattaggatattcatagtca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 gcaagaaaagatgcatattctgatttccccaagataatctcattaggatattcatagtca 2725
Query: 388 tctaaaactttgacaagttgcctaattttgttgaattataacactgactcctgttcgagc 447
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2726 tctaaaactttgacaagttgcctaattttgttgaataataacactgactcctgttcgagc 2785
Query: 448 ctgttcagtaaattaccattatttgaaagagtaaattgggagagaatgaccgttagccct 507
||||||||||| ||||||||| ||| ||||| ||| ||||||||||| |||||| |||
Sbjct: 2786 tggttcagtaaatcaccattattagaaggagtagatt-ggagagaatgaacgttag-cct 2843
Query: 508 tattaccat 516
|||||||||
Sbjct: 2844 tattaccat 2852
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,341
Number of Sequences: 1807
Number of extensions: 10341
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)