BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1446 1080 0.0
>3x_Contig1446
Length = 10598
Score = 1080 bits (545), Expect = 0.0
Identities = 596/605 (98%), Gaps = 6/605 (0%)
Strand = Plus / Minus
Query: 46 ctttatgggtaagagcgagctgattcgcttttaatctcggcgaagaaaagtgaaaaaaaa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7310 ctttatgggtaagagcgagctgattcgcttttaatctcggcgaagaaaagtgaaaaaaaa 7251
Query: 106 aaaaaaacgagaacagatctcgaagctacatgcatttctacgtaaaatctgatggcttta 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7250 aaaaaaacgagaacagatctcgaagctacatgcatttctacgtaaaatctgatggcttta 7191
Query: 166 tttccgaattaagcttttttaaggaatttagagcaatggagtgagatattggcttgggac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7190 tttccgaattaagcttttttaaggaatttagagcaatggagtgagatattggcttgggac 7131
Query: 226 gttatatttttagagcatgagactgttaaggagggcaccttcccgctacatggaacagca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130 gttatatttttagagcatgagactgttaaggagggcaccttcccgctacatggaacagca 7071
Query: 286 catgaccgtaaaacctaatcaattagctgaaagaggcaatgatttttgccgagagatagg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7070 catgaccgtaaaacctaatcaattagctgaaagaggcaatgatttttgccgagagatagg 7011
Query: 346 tggatcaaagtgtattttttttaggtgcagtnaattccaccctatgaagggttgtaatcc 405
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 7010 tggatcaaagtgtattttttttaggtgcagt-aattccaccctatgaagggttgtaatcc 6952
Query: 406 agggtggtcttaccattccagcagtgctgaaaactgattccctctcgacaattgtagctt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6951 agggtggtcttaccattccagcagtgctgaaaactgattccctctcgacaattgtagctt 6892
Query: 466 tagtccggaacagcttgagatagtttatgtaacgttggctcaattgagaaagaaat-aac 524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6891 tagtccggaacagcttgagatagtttatgtaacgttggctcaattgagaaagaaataaac 6832
Query: 525 atgcgccctataat-aagcatatctcggtgttttgatatatacct-aaacagttagttg- 581
|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6831 atgcgccctataataaagcatatctcggtgttttgatatatacctaaaacagttagttga 6772
Query: 582 attgagactacattcgtcgaaatgtttttctgatcgttctactc-gaaaaaccaatttac 640
||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct: 6771 attgagactacattcgtcgaagtgtttttctgatcgttctactcagaaaaaccaagttag 6712
Query: 641 cagtt 645
|||||
Sbjct: 6711 cagtt 6707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,226
Number of Sequences: 1807
Number of extensions: 19226
Number of successful extensions: 2304
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)