BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH08FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1276 886 0.0
>3x_Contig1276
Length = 6662
Score = 886 bits (447), Expect = 0.0
Identities = 530/551 (96%), Gaps = 5/551 (0%)
Strand = Plus / Minus
Query: 86 cgtttatatctttgaggaaattatctttggtcttttgcttcttgagataaggtctgtcgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6320 cgtttatatctttgaggaaattatctttggtcttttgcttcttgagataaggtctgtcgc 6261
Query: 146 caaaatcctgaatgtttttaaaattctttcttctgcataaattttgtgtattttcaatta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6260 caaaatcctgaatgtttttaaaattctttcttctgcataaattttgtgtattttcaatta 6201
Query: 206 ttaccaactcttgatcagctgcagaaaacccaacatataggttgtaattatcggtattaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6200 ttaccaactcttgatcagctgcagaaaacccaacatataggttgtaattatcggtattaa 6141
Query: 266 attcccaatccaaatgtccaccagtgtagtattcttctgtttccattttatcaggaggaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6140 attcccaatccaaatgtccaccagtgtagtattcttctgtttccattttatcaggaggaa 6081
Query: 326 gaccattactccagtatactcttaccctcgagtataattcggcttttacacttgaaagtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080 gaccattactccagtatactcttaccctcgagtataattcggcttttacacttgaaagtt 6021
Query: 386 ccatttgtttcttgagagacattataacagcaatgttgtatggtatattttcgctatcag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6020 ccatttgtttcttgagagacattataacagcaatgttgtatggtatattttcgctatcag 5961
Query: 446 cggcaggtgagtcatcatccatggctgtatagctatctgttggttcatgtttggttgtgt 505
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5960 cggcaggtgagtcatcatccatggctgtatagctatctgttggttcaatgttggttgtgt 5901
Query: 506 taccatta-cagtctttttagttaccgat-aattgtaccgggttttaaaaggcaaattct 563
|||||||| |||||| || ||||| |||| | ||| |||||||| || |||||||||||
Sbjct: 5900 taccattaccagtctcttcagttagcgatgatttgcaccgggttagaagaggcaaattct 5841
Query: 564 gaatttcctgtc-ccaaggattcgttttcctttttc-caaaaatt-taaaaaggcttcct 620
|||||||||||| ||||||||||||||||| | ||| |||||||| || || ||||||||
Sbjct: 5840 gaatttcctgtcgccaaggattcgttttccctattcgcaaaaattgtagaatggcttcct 5781
Query: 621 gttggaacaac 631
|| ||||||||
Sbjct: 5780 gtaggaacaac 5770
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,687
Number of Sequences: 1807
Number of extensions: 14687
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)