BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZH08RM1.SCF screened BAC_end
         (949 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1735                                                        1068   0.0  

>3x_Contig1735 
          Length = 19486

 Score = 1068 bits (539), Expect = 0.0
 Identities = 649/674 (96%), Gaps = 9/674 (1%)
 Strand = Plus / Plus

                                                                         
Query: 47    gcttttggacaagggctcgcgaacaaggttttaatagcattgaggaacttaagaattctt 106
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16137 gcttttggacaagg-ctcgcgaacaaggttttaatagcattgaggaacttaagaattctt 16195

                                                                         
Query: 107   tgaaagaagaaattgaaaagaagaaactcgagttaaacagaattgatccactgaaagaat 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16196 tgaaagaagaaattgaaaagaagaaactcgagttaaacagaattgatccactgaaagaat 16255

                                                                         
Query: 167   tggaagactacgaacaaagaaccaaaatgtcatctaacattgctaagtcccgtgtgttta 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |
Sbjct: 16256 tggaagactacgaacaaagaaccaaaatgtcatctaacattgctaagtcccgtggtccga 16315

                                                                         
Query: 227   ttgatccatctatgccaaaacagccgtttaagactttggacagctttttggatgtggaaa 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16316 ttgatccatctatgccaaaacagccgtttaagactttggacagctttttggatgtggaaa 16375

                                                                         
Query: 287   aagtgaaaaacctctctaaacaagaatgcgaatttctttggagagccagatgggccaata 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16376 aagtgaaaaacctctctaaacaagaatgcgaatttctttggagagccagatgggccaata 16435

                                                                         
Query: 347   aggacaatgtattgaacgctgttgttccaaatcgatatctgggaaaagatcagtgcctta 406
             |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 16436 aggacaatgtattgaacgctgttgttccaa-tcgatatctgggaaaagatcagtgcctta 16494

                                                                         
Query: 407   gccaaagaaaacccattcttcgttatccctttgccaagagagcgtgcagttgaagaaact 466
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16495 gccaaagaaaacccattcttcgttatccctttgccaagagagcgtgcagttgaagaaact 16554

                                                                         
Query: 467   gctgctgaatctgcagagaaacaagaatccgccatggnaatgcattacattcagtggcaa 526
             ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 16555 gctgctgaatctgcagagaaacaagaaccggccatggaaatgcattacattcagtggcaa 16614

                                                                         
Query: 527   tttgtaggacctaaaaccgtccactgtattatgactactctagcagagtataaa-tgcac 585
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 16615 tttgtaggacctaaaaccgtccactgtattatgactactctagcagagtataaattgcac 16674

                                                                         
Query: 586   aaag-atttgcaagaactcatactactctacagtttcactttgaatttggccaaggaaaa 644
             |||| |||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct: 16675 aaagaatttgcaagacctcatactactctacagttccac-ttggatttggccaaggaaaa 16733

                                                                         
Query: 645   gaacattgttttgatgaacaggccaaggtggaatctgatttttatggtttccctaacaga 704
             ||||||||| ||||||||| |||||| || |||||||||| | || ||||||||| ||| 
Sbjct: 16734 gaacattgtattgatgaac-ggccaa-gttgaatctgattctaat-gtttccctaccag- 16789

                           
Query: 705   aatctcaactattg 718
             ||||||||||||||
Sbjct: 16790 aatctcaactattg 16803


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9494
Number of Sequences: 1807
Number of extensions: 9494
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)