BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH09FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig890 1047 0.0
3x_Contig1423 375 e-103
>3x_Contig890
Length = 3684
Score = 1047 bits (528), Expect = 0.0
Identities = 585/604 (96%)
Strand = Plus / Minus
Query: 250 ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 3625
Query: 310 gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 3565
Query: 370 gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 3505
Query: 430 ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 3445
Query: 490 ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 3385
Query: 550 cattatgtaagatgagtatgcgttaagcattggtcaaatagtgaagcagtttaagactaa 609
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 cattatgtaagaggagtatgcgttaagcattggtcaaatagtgaagcagtttaagactaa 3325
Query: 610 ccactaccatttctgcgtttagttaacggtttcttttccatttagtaaatgtcattacgt 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 ccactaccatttctgcgtttagttaacggtttcttttccatttagtaaatgtcattacgt 3265
Query: 670 atttttttctgtcagcatgccaagtgtaaacattggatatcaaaggaaaaagtttatatt 729
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 atttttttctgtcagcatgcaaagtgtaaacattggatatcaaaggaaaaagtttatatt 3205
Query: 730 aggaaaccgtaaccgttaaaagcatctgttcatttaaaaagcccatttcatagcttggct 789
| ||||| ||||||||||||||||||||||||||||| ||| ||| |||||||||| ||
Sbjct: 3204 aagaaacgttaaccgttaaaagcatctgttcatttaaagagcacatatcatagcttgcct 3145
Query: 790 gaattcattggcccgccaagcttttcagaatgaaactttcactatctaccttacttcctt 849
||||||||||||| | ||||||| |||||||| || ||||||||||| ||||| | ||
Sbjct: 3144 gaattcattggccgccaaagctttcgagaatgaagctatcactatctacattactacgtt 3085
Query: 850 ggtt 853
||||
Sbjct: 3084 ggtt 3081
>3x_Contig1423
Length = 8454
Score = 375 bits (189), Expect = e-103
Identities = 189/189 (100%)
Strand = Plus / Minus
Query: 87 tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 130
Query: 147 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 70
Query: 207 gctaattggtgcaagcgtggctactacttccatgattaccaagttaaaactctcaaaaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gctaattggtgcaagcgtggctactacttccatgattaccaagttaaaactctcaaaaat 10
Query: 267 tctaaacca 275
|||||||||
Sbjct: 9 tctaaacca 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7012
Number of Sequences: 1807
Number of extensions: 7012
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)