BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH09RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1500 331 2e-90
>3x_Contig1500
Length = 9720
Score = 331 bits (167), Expect = 2e-90
Identities = 198/207 (95%), Gaps = 1/207 (0%)
Strand = Plus / Plus
Query: 40 ttacctcgatatcgattataattt-tgggctggaattcgtcaacttgcgtttgaagtgat 98
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 9514 ttacctcgatatcgattataaatcatgggctggaattcgtcaacttgcgtttgaagtgat 9573
Query: 99 ctctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcc 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9574 ctctttcatcatgttcaccgattgtttgatttatttggttcatagatggttgcactggcc 9633
Query: 159 tatagtttacagggctttgcacaagcctcatcacaaatggttggttaccattttttttgc 218
|| ||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct: 9634 tagagtttacagggctttgcacaagcctcatcacaaatggttggttaccactccatatgc 9693
Query: 219 gtcgcatgcgttccacccagtggacgg 245
|||||||||||||||||||||||||||
Sbjct: 9694 gtcgcatgcgttccacccagtggacgg 9720
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9614
Number of Sequences: 1807
Number of extensions: 9614
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)