BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH11FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1142 0.0
>3x_Contig1791
Length = 39945
Score = 1142 bits (576), Expect = 0.0
Identities = 658/676 (97%), Gaps = 7/676 (1%)
Strand = Plus / Minus
Query: 87 caagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattctttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20127 caagagtttaacgtatatatcaagtctttcgttttgatatgagaccatttctattctttt 20068
Query: 147 tattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtaccgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20067 tattataccattgacatgatcgattaagtttgatctagtctttgttgataagggtaccgt 20008
Query: 207 gtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20007 gtcaaggtatatgttaagctgtgagtgtagcgaataccatttcgacatattctgttcatg 19948
Query: 267 gttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19947 gttacttttcagctttagtattttatcttctactgatgtccttctttgtaccacaaatgt 19888
Query: 327 attacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaataga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19887 attacgcagtccggcgatttctatttcacatccatcgatgctgccggagaaataaataga 19828
Query: 387 gtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19827 gtttttccaggctaatgcctctgttctattcctaaacattatatcacgtttttggctttg 19768
Query: 447 attcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggttgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19767 attcacaatggataaaacattggggtcagtattcttgttttccgttaagaataggttgtt 19708
Query: 507 acaatattccatttcgtacagcgaagaaagcgggtgagataaatcaataatgtaatttga 566
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 19707 acaatattccatttcgtacagcgaagaaagcggttgagataaatcaataatgtaatttga 19648
Query: 567 ggtcttagttaattcatctagttcgatctttggatccagcccagacatgctatcaaagat 626
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 19647 ggtcttagttaattcatctagttcgatctttggatccagccaggacatgctatcaaagaa 19588
Query: 627 aaattggaagg-agtagtcaatatcgcaaacttattctt-caatgatttttta-cacatt 683
|||| |||||| |||||||||||||||||||||| |||| |||||||| |||| ||||||
Sbjct: 19587 aaataggaaggaagtagtcaatatcgcaaacttagtcttccaatgattctttaccacatt 19528
Query: 684 tcctacaagaga-aactttcttgtactgacttt-atttttattttccccat-tttagtcc 740
|||||||||||| |||||||||||||||||||| |||| ||||| |||||| || ||| |
Sbjct: 19527 tcctacaagagagaactttcttgtactgactttcatttctatttcccccatcttaagtac 19468
Query: 741 ttt-aaataccccttt 755
||| ||||||||||||
Sbjct: 19467 tttcaaataccccttt 19452
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,339
Number of Sequences: 1807
Number of extensions: 13339
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)