BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1049 1049 0.0
>3x_Contig1049
Length = 4107
Score = 1049 bits (529), Expect = 0.0
Identities = 605/628 (96%), Gaps = 3/628 (0%)
Strand = Plus / Plus
Query: 78 ttgggattgaaagggcaccctccgaacatatatataggatccttcttcacctttgccaat 137
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 ttgggattgaaagggcac--tccgaacatatatataggatccttcttcacctttgccaat 74
Query: 138 agtttttctctttgttctctcttctttaaattctcattggttgcttcatctttctcatga 197
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 75 agtttttctctttgttttctcttctttaaattctcattggttgcttcatctttctcagga 134
Query: 198 atgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atgatttcttcgtcattggcaatatgcaacggctcttcagtctccgaaacagagtgcttg 194
Query: 258 tcattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatat 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tcattaatggagatatacctgtttcctgtataagtttcgtcccagtaatccttaccatat 254
Query: 318 gatcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttct 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gatcctcgaagtgtgttcttattgtgataattcgctctgctcaactgatggtaaccttct 314
Query: 378 tcaaaactagcttgcaactgctctaatatagaatcatatgttgcaagattcttaacaatg 437
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 315 tcaaaactagcttgcaactgctctaatagagaatcataggttgcaagattcttaacaatg 374
Query: 438 agttgatatatgtcatcctccgtcatcattggcttcctagcgtctattaatatccaaatc 497
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 375 agttgatatatgtcatcctccgtcatcattggtttcctagcgtctattaatatccaaatc 434
Query: 498 gtggcagtttcttctcatattacgtatattattcagtcataaacgttctaaaccaaactt 557
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 435 gtggcagtttcttctcatattacgtatattattcagtcataaacgttttaaaccaaactt 494
Query: 558 ttgaagatgactcgaatatttgcaacttaatcatagtcaatgatttatataaacgaattc 617
|||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttgaagttgtctgaaatatttgtaacttaatcatagtcaatgatttatataaacgaattc 554
Query: 618 gaaagtgaaag-aagctagcaatattgcgaccaaccagcttcagtagaggcaaggaagag 676
||| ||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 555 gaaggtgaaagaaagttagcaatattgcgacaaaccagctccagtagaggcaaggaagag 614
Query: 677 tgttccataatgaccgattgatttaccc 704
||| | | |||||||||| |||| ||||
Sbjct: 615 tgtacaaaaatgaccgatagattaaccc 642
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7871
Number of Sequences: 1807
Number of extensions: 7871
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)