BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZH12FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1082 1360 0.0
>3x_Contig1082
Length = 4646
Score = 1360 bits (686), Expect = 0.0
Identities = 752/769 (97%), Gaps = 4/769 (0%)
Strand = Plus / Minus
Query: 89 tcgacaagggcttggataatatgaggatggcaatggccttggttgacggcagagtaagca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 tcgacaagggcttggataatatgaggatggcaatggccttggttgacggcagagtaagca 4217
Query: 149 gacaagaaatccaaatattcctttccttcaggatcccaaacatgggcaccactagctctg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4216 gacaagaaatccaaatattcctttccttcaggatcccaaacatgggcaccactagctctg 4157
Query: 209 ctgaaaacaacaggcaaaggatggtagttatgagcagagtattcttgttcgtattcgata 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4156 ctgaaaacaacaggcaaaggatggtagttatgagcagagtattcttgttcgtattcgata 4097
Query: 269 gtcttggcagacgataagttcaattcagcagtgacaaccatggtatttctctgtattgat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4096 gtcttggcagacgataagttcaattcagcagtgacaaccatggtatttctctgtattgat 4037
Query: 329 acaattatattattaattcttattgctcattgaataatcaaaaagagatattcaatgtat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4036 acaattatattattaattcttattgctcattgaataatcaaaaagagatattcaatgtat 3977
Query: 389 gaaccatactgaatctaagtgactacttttaccaaagatgttgaatcgtcttctgttcct 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3976 gaaccatactgaatctaagtgactacttttaccaaagatgttgaatcgtcttctgttcct 3917
Query: 449 cttgtctcttatatatgagaaaaaaaagatccgctttgaaaagttccatgtcatggcata 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3916 cttgtctcttatatatgagaaaaaaaagatccgctttgaaaagttccatgtcatggcata 3857
Query: 509 ttccatgccattacaatttccaaatgacaacttgcgctagctntagtcgaaagtccccgc 568
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3856 ttccatgccattacaatttccaaatgacaacttgcgctagctttagtcgaaagtccccgc 3797
Query: 569 accgctcgttatcattatcacatagaggatattttgtcactctgtcactgccagaatacg 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3796 accgctcgttatcattatcacatagaggatattttgtcactctgtcactgccagaaaacg 3737
Query: 629 attaacattattccaaaggttagttaagtgatatgtaccccgatttatggtctgtgtgaa 688
||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct: 3736 attaacattattccaaagggtagttaagtgaaagttaccccgatttatggtctgtgtgaa 3677
Query: 689 gaacgacagcgcgcgaaactg-attccgggttttgcgcgtagtggactgtggaacctcgc 747
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 3676 gaacgacagcgcgcgaaactgaattccgggttttgcgcgtagtggactgtgaaacctcgc 3617
Query: 748 tcttcgatgcacttaggggagtgaaccttttcac-atataaaaag-gatctttaagccgt 805
|||||||||||||||||||||||||| ||||||| |||||||||| |||||| |||| ||
Sbjct: 3616 tcttcgatgcacttaggggagtgaactttttcacaatataaaaagtgatcttaaagctgt 3557
Query: 806 tggttttgac-aagaaaaccatggaacaggtgcttgattaccagtaaga 853
|||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 3556 tggttttgacaaagaaaacgatggaacaggtgcttgagtagcagtaaga 3508
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7191
Number of Sequences: 1807
Number of extensions: 7191
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)