BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA02FM1.SCF screened BAC_end
(891 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1249 0.0
>3x_Contig1594
Length = 9813
Score = 1249 bits (630), Expect = 0.0
Identities = 685/699 (97%), Gaps = 4/699 (0%)
Strand = Plus / Plus
Query: 84 tggaagattgaaattcttgagagaatataaaggtaacaaagcaatggtacgtatactctg 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2965 tggaagattgaaattcttgagagaatataaaggtaacaaagcaatggtacgtatactctg 3024
Query: 144 gtcataaagagatgaggtgaccgatgttatacagacaagttctgcaaagacccatattgc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3025 gtcataaagagatgaggtgaccgatgttatacagacaagttctgcaaagacccatattgc 3084
Query: 204 agaaatcatnnctagntgtttaaaaaatggtggctgatacagatgtcaaagagattgttg 263
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3085 agaaatcaattctagttgtttaaaaaatggtggctgatacagatgtcaaagagattgttg 3144
Query: 264 tagatgcacttcctgaggtttctgaacctgcagctgttgatgacagtgaagtgacagagg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3145 tagatgcacttcctgaggtttctgaacctgcagctgttgatgacagtgaagtgacagagg 3204
Query: 324 atgctaccgtgcaggataagaagaaaaagaagaagaagaagaagaagaagggtaataata 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3205 atgctaccgtgcaggataagaagaaaaagaagaagaagaagaagaagaagggtaataata 3264
Query: 384 tgaagaacattgctttaatataccctgatgagaaataccctgagggacagtggatggaat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3265 tgaagaacattgctttaatataccctgatgagaaataccctgagggacagtggatggaat 3324
Query: 444 accatcaagatttcaatctgaaaagagttaccgatgaagagaggagatacttggaaagaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3325 accatcaagatttcaatctgaaaagagttaccgatgaagagaggagatacttggaaagaa 3384
Query: 504 gtgaagagtacgaacaaaggtgtaatgatatgcgtaaaggtgctgagattcaccgtcgtg 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3385 gtgaagagtacgaacaaaggtgtaatgatatgcgtaaaggtgctgagattcaccgtcgtg 3444
Query: 564 taagggaaagtgttagaaataagatcaagccgggtatgacattgactgagattgctaatt 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3445 taagggaaagtgttagaaataagatcaagccgggtatgacattgactgagattgctaatt 3504
Query: 624 tggtggaagacgggactagaaaagttactggcactgatgccaatggggatcacgttgata 683
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3505 tggtggaagacgggactagaaagtttactggcactgatgccaatggggatcacgttgata 3564
Query: 684 gaccaaagagccaaagtattgcgttcccaactggtctatcgctcaaccactgggcctgct 743
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 3565 gaccaaagagccaaggtattgcgttcccaactggtctatcgctcaaccactgtg-ctgct 3623
Query: 744 aattgcaactcctaatggctggtgacaaagaccgtgttg 782
||| | ||||||||| ||||||||| ||||||||||||
Sbjct: 3624 catttc-actcctaat-gctggtgac-aagaccgtgttg 3659
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9108
Number of Sequences: 1807
Number of extensions: 9108
Number of successful extensions: 667
Number of sequences better than 1.0e-20: 1
length of query: 891
length of database: 10,358,551
effective HSP length: 16
effective length of query: 875
effective length of database: 10,329,639
effective search space: 9038434125
effective search space used: 9038434125
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)