BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA02RM1.SCF screened BAC_end
(865 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1580 0.0
>3x_Contig1724
Length = 20938
Score = 1580 bits (797), Expect = 0.0
Identities = 819/825 (99%), Gaps = 1/825 (0%)
Strand = Plus / Minus
Query: 41 gcttatctgtttgccctcttcactgagacatatccaggtccaggacaccggacacaagag 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10767 gcttatctgtttgccctcttcactgagacatatccaggtccaggacaccggacacaagag 10708
Query: 101 acaagagacaagagacaagagaaactaagggagggggaagaaaaacggtattattttacc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10707 acaagagacaagagacaagagaaactaagggagggggaagaaaaacggtattattttacc 10648
Query: 161 ccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatcattttttaac 220
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 10647 ccgcatctatttctcttgaagcactctttaaatgctcgtgataattaatcactttgtaac 10588
Query: 221 attatgtattctctcttcctaaagtattttcaattacttacccttaatttttgagaggcc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10587 attatgtattctctcttcctaaagtattttcaattacttacccttaatttttgagaggcc 10528
Query: 281 tctttttcttttcatccgtcagatcaacgatcatagaatcagtttaatcaataaaacttg 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10527 tctttttcttttcatccgtcagatcaacgatcatagaatcagtttaatcaataaaacttg 10468
Query: 341 cgtcaaactactcgtagaagcaaaggattgaatcgtttacagatttccagtccaaccgaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10467 cgtcaaactactcgtagaagcaaaggattgaatcgtttacagatttccagtccaaccgaa 10408
Query: 401 ttgtcccaatgtcttagatgagactcaggtgctatgtaatggtgtatgtatgtgtggtta 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10407 ttgtcccaatgtcttagatgagactcaggtgctatgtaatggtgtatgtatgtgtggtta 10348
Query: 461 gcatgaattctaacctccattcttgattgttaattggagtatcactcagccaatcaattt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10347 gcatgaattctaacctccattcttgattgttaattggagtatcactcagccaatcaattt 10288
Query: 521 tcagaaactgccaaaaccttgaaattttcagcttcaaagaattagatattattataacaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10287 tcagaaactgccaaaaccttgaaattttcagcttcaaagaattagatattattataacaa 10228
Query: 581 aagatagagcagcaattacacattcaaacaaaccaatgagaacaaagacagaatcgtgaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10227 aagatagagcagcaattacacattcaaacaaaccaatgagaacaaagacagaatcgtgaa 10168
Query: 641 ttgctgtcgattaggagcgtttgaaaaggtacccaattgttgatcgtttaatcggattag 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10167 ttgctgtcgattaggagcgtttgaaaaggtacccaattgttgatcgtttaatcggattag 10108
Query: 701 acatcaattgaagcaaataactgtttttgtctctcttagtgagaaaaagtagcgaaaaaa 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10107 acatcaattgaagcaaataactgtttttgtctctcttagtgagaaaaagtagcgaaaaaa 10048
Query: 761 gaaaaaatatgtggaggcgttctatctcgattttaaggccgtcacccacaacagtgattt 820
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 10047 gaaaaaatatgtggaggcgttctatctcgattttaaggccgtcaccaacaacagtgattc 9988
Query: 821 catccaatgtgttgagcggatcacaattagaaatggaaaccattg 865
|||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 9987 catccaatgtgttgagcggatcacaattag-aattgaaaccattg 9944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7877
Number of Sequences: 1807
Number of extensions: 7877
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 865
length of database: 10,358,551
effective HSP length: 16
effective length of query: 849
effective length of database: 10,329,639
effective search space: 8769863511
effective search space used: 8769863511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)