BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA03FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 948 0.0
>3x_Contig1649
Length = 14442
Score = 948 bits (478), Expect = 0.0
Identities = 571/598 (95%), Gaps = 3/598 (0%)
Strand = Plus / Plus
Query: 87 gcagcaagaaaaggatgccagcttcaaggaaatggttacagacagtgaaaaaatcctacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3827 gcagcaagaaaaggatgccagcttcaaggaaatggttacagacagtgaaaaaatcctacc 3886
Query: 147 aaaagatattactacctatcgtgtttcatttgattatcttcactataaatctcatagaag 206
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3887 aaaagatattactacctatcgtgtagcatttgattatcttcactataaatctcatagaag 3946
Query: 207 tcctgactttattga-ctaaagacgtctatttttaatgatatatcaattctcgaaggttt 265
||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 3947 tcctgacgatattgaactaaagacgtctattttcaatgatatatcaattctcgaaggttt 4006
Query: 266 tatctacgataacattttcacagcaaatcttcaagcccccgttcatctcatgatgcacca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4007 tatctacgataacattttcacagcaaatcttcaagcccccgttcatctcatgatgcacca 4066
Query: 326 ctcgtctgacaacagtaaagtgctaaacagcgtcaacgaatacaaccttgtgtggaattt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4067 ctcgtctgacaacagtaaagtgctaaacagcgtcaacgaatacaaccttgtgtggaattt 4126
Query: 386 tcatgaagtaatgagcagttttattagaatcaggaacttccccacattacctggaccacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4127 tcatgaagtaatgagcagttttattagaatcaggaacttccccacattacctggaccacc 4186
Query: 446 ggtaataacagcttgcatggaaactccaaattctcagagccaacgaatcgaaataacaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4187 ggtaataacagcttgcatggaaactccaaattctcagagccaacgaatcgaaataacaaa 4246
Query: 506 ggcaatctttgataatactaaacttggaatcatgcaaaaggatggaacaactctgggaga 565
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 4247 ggcaatctttgataatact-aacttggaatcatgcaaaaggatggaacaactctggagga 4305
Query: 566 attaccaaacctggaaacccaatacgacgggcttaaaaaacctccctaatatattaagtg 625
||||||||| ||||| || ||||||||||||||||| || || | ||||||||||||||
Sbjct: 4306 cttaccaaacatggaacccaaatacgacgggcttaaagaaactacataatatattaagtg 4365
Query: 626 gtctccggtttaaagactttggaaagcaattccaaaaggatttattaaattgtttaaa 683
||||||| || | |||| |||| ||||||| ||||||||| || | |||||||||||
Sbjct: 4366 ttctccggctttatgactctggagagcaattgcaaaaggatgta-tcaattgtttaaa 4422
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8807
Number of Sequences: 1807
Number of extensions: 8807
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)