BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZA03RM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1633                                                        1217   0.0  

>3x_Contig1633 
          Length = 12594

 Score = 1217 bits (614), Expect = 0.0
 Identities = 636/642 (99%), Gaps = 1/642 (0%)
 Strand = Plus / Plus

                                                                         
Query: 44    cttctaatttgaccgctaagccgcccatcagcattaacattacagatcctttttatagtg 103
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9547  cttctaatttgaccgctaagccgcccatcagcattaacattacagatcctttttatagtg 9606

                                                                         
Query: 104   ctgcagctaaacattttgataaactattccaacgatatggtggtggtactattcaaatat 163
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9607  ctgcagctaaacattttgataaactattccaacgatatggtggtggtactattcaaatat 9666

                                                                         
Query: 164   taaatctaataaaaacaaaagagaagaatcctcgtgaaacaaaattaggagaataatttg 223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9667  taaatctaataaaaacaaaagagaagaatcctcgtgaaacaaaattaggagaagaatttg 9726

                                                                         
Query: 224   aaaggtgtattaaatatttaaaccagtttcttcctgatatcaagaaattagagtacaaag 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9727  aaaggtgtattaaatatttaaaccagtttcttcctgatatcaagaaattagagtacaaag 9786

                                                                         
Query: 284   catgggatatgagcaaagcatcaaaatctcatggtcagatggtgattgagtttttagaaa 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9787  catgggatatgagcaaagcatcaaaatctcatggtcagatggtgattgagtttttagaaa 9846

                                                                         
Query: 344   aatatgcaaaggaaactgtggagactactggtatctttcataatggaaaagattttcagt 403
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9847  aatatgcaaaggaaactgtggagactactggtatctttcataatggaaaagattttcagt 9906

                                                                         
Query: 404   caacatctgtacaagagggtgtttgcagaacaaattgtattgactgcttagatagaacaa 463
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9907  caacatctgtacaagagggtgtttgcagaacaaattgtattgactgcttagatagaacaa 9966

                                                                         
Query: 464   atgcagctcagtttgtcattggaaaacgtgctcttggtgaacaactacatgcaatgggaa 523
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9967  atgcagctcagtttgtcattggaaaacgtgctcttggtgaacaactacatgcaatgggaa 10026

                                                                         
Query: 524   ttatcgaagaaaagtttttagaatacgattcggacatcgttaacatttttgactgaatta 583
             ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10027 ttatcgaagaaaagtttttagaatacgattcggacatcgttaaca-ttttgactgaatta 10085

                                                                         
Query: 584   ttccatgaccacggtgataccattgccttacaatatgggggctcccatttggtgaacaca 643
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10086 ttccatgaccacggtgataccatagccttacaatatgggggctcccatttggtgaacaca 10145

                                                       
Query: 644   atggatacttatagaaaaatcaatcattggacctcacattct 685
             ||||| |||||||||||||||||||| |||| ||||||||||
Sbjct: 10146 atggagacttatagaaaaatcaatcaatggagctcacattct 10187


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,095
Number of Sequences: 1807
Number of extensions: 10095
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)