BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA04FM1.SCF screened BAC_end
(1052 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1078 470 e-132
>3x_Contig1078
Length = 3134
Score = 470 bits (237), Expect = e-132
Identities = 292/308 (94%), Gaps = 2/308 (0%)
Strand = Plus / Plus
Query: 119 aaaagctttcagaatgtccaaggtatcgcacaatcagctcaaagtaagcttgaaaagaga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aaaagctttcagaatgtccaaggtatcgcacaatcagctcaaagtaagcttgaaaagaga 730
Query: 179 cttgggcagncatcacgttcaataaacctaatgaattggatgttacttccaatcctactg 238
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 731 cttgggcagtcatcacgttcaa-aaacctaatgaattggatgttacttccaatcctactg 789
Query: 239 gtgatatctttatttttttcagaatccaaacgtttaaaacaaaacgctcaaccagataca 298
||||||||| | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gtgatatctcaaagatgt-cagaatccaaacgtttaaaacaaaacgctcaaccagataca 848
Query: 299 aaaccatacagacttatcgcgctagtgagcatgccatatgatgggaaacgaacgaaattc 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aaaccatacagacttatcgtgctagtgagcatgccatatgatgggaaacgaacgaaattc 908
Query: 359 ttcactttggtagattcaaagactctcgataaaccttggaaggactatgccaatgttgta 418
|||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||
Sbjct: 909 ttcactttggtagattcaaagactcttgataaattttggaaggattatgttaatgttgta 968
Query: 419 aaaacaag 426
||||||||
Sbjct: 969 aaaacaag 976
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8007
Number of Sequences: 1807
Number of extensions: 8007
Number of successful extensions: 323
Number of sequences better than 1.0e-20: 1
length of query: 1052
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1036
effective length of database: 10,329,639
effective search space: 10701506004
effective search space used: 10701506004
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)