BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZA05FM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1617                                                         971   0.0  

>3x_Contig1617 
          Length = 15119

 Score =  971 bits (490), Expect = 0.0
 Identities = 555/574 (96%), Gaps = 2/574 (0%)
 Strand = Plus / Minus

                                                                         
Query: 179   ggtagttttgaggaattgaatctacatttgagggatcacactttcgttttgggtactgct 238
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15060 ggtagttttgaggaattgaatctacatttgagggatcacactttcgttttgggtactgct 15001

                                                                         
Query: 239   caaccaaccgtctccgatgttacattgttcgaacatgttttaccagttgccaaggagttg 298
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15000 caaccaaccgtctccgatgttacattgttcgaacatgttttaccagttgccaaggagttg 14941

                                                                         
Query: 299   atcaactcttctaaagatgtcaagggtaactatgctaagtacagacatattcttagatgg 358
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14940 atcaactcttctaaagatgtcaagggtaactatgctaagtacagacatattcttagatgg 14881

                                                                         
Query: 359   tcacaatacttgaacgatttattacaattgaacgacttgactttgaacattgatttggat 418
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14880 tcacaatacttgaacgatttattacaattgaacgacttgactttgaacattgatttggat 14821

                                                                         
Query: 419   cttccacgtgaagtcatcgaaaagaagaagaaggaagataagaaggacgaggctgaagct 478
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14820 cttccacgtgaagtcatcgaaaagaagaagaaggaagataagaaggacgaggctgaagct 14761

                                                                         
Query: 479   tccaagaagggcggtgaagcagcagcaaagaaggatggtaaggccgataaacaaccaaag 538
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 14760 tccaagaagggcggtgaagcagcagcaaagaaggatggtaaggccgataaacaaccaaga 14701

                                                                         
Query: 539   agtaagccagatgaagatactttaaagaaattgagagaagaagctaaggcaaagaaagct 598
              |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 14700 ggtaagccagatgaagaaactttaaagaaattgagagaagaagctaaggcaaagaaggct 14641

                                                                         
Query: 599   gccaagaaagccgccaatgccccacaagccc-agcaccaaccaaagagtctgccaaacca 657
             |||||||| ||||||||||||| |||||||| ||||||| || |||||||||||||||||
Sbjct: 14640 gccaagaaggccgccaatgcccaacaagcccaagcaccagcccaagagtctgccaaacca 14581

                                                                         
Query: 658   tcttcaggtgtaattgatttccgtgtttggtttcatttcaaaagctatcaagcttccaaa 717
             ||| ||||||||||||||||||||| |||||||||||  ||| |||||||||| |||| |
Sbjct: 14580 tctccaggtgtaattgatttccgtg-ttggtttcattcaaaaggctatcaagcatccaga 14522

                                               
Query: 718   tgctgactctttatatgtttctaccatccatgtt 751
             |||||||||| ||||||||||||||||| |||||
Sbjct: 14521 tgctgactctctatatgtttctaccatcgatgtt 14488


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7960
Number of Sequences: 1807
Number of extensions: 7960
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)