BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA05RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1011 0.0
>3x_Contig1423
Length = 8454
Score = 1011 bits (510), Expect = 0.0
Identities = 558/568 (98%), Gaps = 7/568 (1%)
Strand = Plus / Plus
Query: 47 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5511 tgactccttccccaatggatgtctacgccgactacgccactgcttccaagaagaagttgt 5570
Query: 107 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5571 aaatgtcatctttaaaatattataactgtgctgtatagatatttttttatagctgtcagt 5630
Query: 167 atgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttctcttc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5631 atgttttctctgaaacaataatatattgttgacattttaccaattgttcctcttctcttc 5690
Query: 227 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5691 acaagctacatatcatatatattcacactcattataattgaccttaaccctttaggatcg 5750
Query: 287 atcataataaatgatcaatatacgtgacaaactaactaaggg-aaactatatgactgtcc 345
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5751 atcataataaatgatcaatatacgtgacaaactaactaaggggaaactatatgactgtcc 5810
Query: 346 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5811 tatacacttcgtagcaagaaaaaccagagaaaaagacatatggtaaaaaaaagagatagt 5870
Query: 406 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5871 gataaaatcaaggtaaaagggatttctcttatatgaccattagagtacaggtcaagatac 5930
Query: 466 gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5931 gccaatcatattaataggcttctggaatttaaacactgccagtctcttttttacagtagt 5990
Query: 526 ctttctttccggttgaccttttttttttatttactttacaggaattttttttactttttt 585
||||||| ||||||||||||||||||||||| ||||||||| | ||||||||| ||||
Sbjct: 5991 ctttctt-ccggttgaccttttttttttatt-actttacagta--tttttttacctttta 6046
Query: 586 agactttttttttttttttaataattaa 613
|||||||||||||| ||||||||||||
Sbjct: 6047 agactttttttttt--tttaataattaa 6072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,381
Number of Sequences: 1807
Number of extensions: 23381
Number of successful extensions: 2496
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)