BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC3ZA06FM1.SCF screened BAC_end (923 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1293 712 0.0 >3x_Contig1293 Length = 6455 Score = 712 bits (359), Expect = 0.0 Identities = 440/462 (95%), Gaps = 7/462 (1%) Strand = Plus / Minus Query: 83 agtcaagtttgaatcaaacctgatcaaattaatcggagaaactgatttttttttgttccg 142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3224 agtcaagtttgaatcaaacctgatcaaattaatcggagaaactgatttttttttgttccg 3165 Query: 143 tttcgtacgttgttctctgagatttcttgagtattttgaaggcgttttattttttttaat 202 |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct: 3164 tttcgtacgttgttctctgagagtccttgagtattttgaaggcgttttattttttttaat 3105 Query: 203 tattcta--ttnnngtgggttggggcaacggaagtaagaaataggaaatggcactttgct 260 ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3104 tattctaaatttttgtggg--ggggcaacggaagtaagaaataggaaatggcactttgct 3047 Query: 261 gcgggaaatagggaaggtcatttaatcatgaggtacggctgtgatgttcctttggtccga 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3046 gcgggaaatagggaaggtcatttaatcatgaggtacggctgtgatgttcctttggtccga 2987 Query: 321 gagggtggaggcacgtgacatgtgtcacgtggtcgttttgaatggccgggtaaatgtcgg 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2986 gagggtggaggcacgtgacatgtgtcacgtggtcgttttgaatggccgggtaaatgtcgg 2927 Query: 381 attttcttattcttcgatactcccatcaaattcaatctcatcacggtactttggatattc 440 ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 2926 attttcttattcttcgagactcccagcaaattcaatctcatcacggtacttcggatattc 2867 Query: 441 ttgtatatatatatatatatatatacactattagcttattccctcttttgttaa-atacc 499 ||||||||||||||||||||||||||||||||||||||| | ||| | ||| || ||| | Sbjct: 2866 ttgtatatatatatatatatatatacactattagcttatgcactc-tatgtcaatata-c 2809 Query: 500 gttccactttacgccacattataacacccaacaatgagtttt 541 |||||||||||| ||||||| |||||||||||||||||||| Sbjct: 2808 gttccactttacagcacattacaacacccaacaatgagtttt 2767 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,184 Number of Sequences: 1807 Number of extensions: 15184 Number of successful extensions: 2534 Number of sequences better than 1.0e-20: 1 length of query: 923 length of database: 10,358,551 effective HSP length: 16 effective length of query: 907 effective length of database: 10,329,639 effective search space: 9368982573 effective search space used: 9368982573 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)