BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA06RM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1186 878 0.0
>3x_Contig1186
Length = 4633
Score = 878 bits (443), Expect = 0.0
Identities = 564/591 (95%), Gaps = 10/591 (1%)
Strand = Plus / Minus
Query: 50 ttgttaaatgacaatgattcattcaatttggtcgagacctgtttcaacaatgttagtttg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ttgttaaatgacaatgattcattcaatttggtcgagacctgtttcaacaatgttagtttg 831
Query: 110 tcgtccaacttagatttttcttggtttctcatcttcaatttaagttcttgttccaaatag 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tcgtccaacttagatttttcttggtttctcatcttcaatttaagttcttgttccaaatag 771
Query: 170 tagtacgaattaaatcgggcatcggattcattgaacccattcttcaaacaatgttctcca 229
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 770 tagtacgaattaaatcgggcatcggattcattgaacccattcttcaaacaa-gttctcca 712
Query: 230 tctgagcaaatatggtaatgcaaacgcaagttcttgttgatccagctcaactttcagatc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctgagcaaatatggtaatgcaaacgcaagttcttgttgatccagctcaactttcagatc 652
Query: 290 tgaaattatcttgctgtattctgccttcaactcttcacgtttaatctcacgttcttgctg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tgaaattatcttgctgtattctgccttcaactcttcacgtttaatctcacgttcttgctg 592
Query: 350 tttcttgatcaattcatccttcagcaaataaatctttcttggtaaagcgttctcttctgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tttcttgatcaattcatccttcagcaaataaatctttcttggtaaagcgttctcttctgc 532
Query: 410 aatatctttctcttcatcctcaatgatggccttgccgaatcttctcaaacgtggttccga 469
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 531 aatggctttctcttcatcctcaatgatggccttgccgaatcttctcaaacgtggtt-cga 473
Query: 470 aatgcggcaaaggaaagctttacattccttggttaatgatacaccaatgaatttcctacc 529
||||||||||||| |||||||||| |||||| |||||||||||||||||||||| || |
Sbjct: 472 aatgcggcaaagg-aagctttaca-tccttgtataatgatacaccaatgaatttctta-c 416
Query: 530 cgggatgaaatggatcccaattagattttcaacataaccgggcttccaaacgaaaaagcg 589
| ||||||||||||| |||| ||| | || |||||||| ||| |||||| |||||||
Sbjct: 415 ctggatgaaatggat-ccaaatagtatctc-acataacccggc-tccaaagcgaaaagcg 359
Query: 590 tttgatcttttaccgatgccctacattttcaccaggattaaacctggtacc 640
| ||||| |||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 358 tatgatc-tttaccgatg-cctacattttcaccaggataaaacttggtacc 310
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8724
Number of Sequences: 1807
Number of extensions: 8724
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)