BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA08FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1467 1080 0.0
>3x_Contig1467
Length = 7717
Score = 1080 bits (545), Expect = 0.0
Identities = 625/646 (96%), Gaps = 5/646 (0%)
Strand = Plus / Minus
Query: 91 tcaaggatattgaatgcggctccaagacagtaaaaagtagatgccgcttgttgagtactg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5744 tcaaggatattgaatgcggctccaagacagtaaaaagtagatgccgcttgttgagtactg 5685
Query: 151 atgtttactggcttaggtaaaacaacgtcaacctttggatcaaccaaaatggtagattca 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5684 atgtttactggcttaggtaaaacaacgtcaacctttggatcaaccaaaatggtagattca 5625
Query: 211 caagttctnnttccnttatttggatgccaaaaagtaccgcaaacttcatcaccgacactc 270
||||||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5624 caagttcctttacctaaatttggatgccaaaaagtaccgcaaacttcatcaccgacactc 5565
Query: 271 cacgtatctgccaaatttgagcctacttctgagatttttccataatactctcttccaatg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564 cacgtatctgccaaatttgagcctacttctgagatttttccataatactctcttccaatg 5505
Query: 331 ccaacttcatagttcatatgcctagtgtaactattgaatatctttaaatcaactgggttt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5504 ccaacttcatagttcatatgcctagtgtaactattgaatatctttaaatcaactgggttt 5445
Query: 391 aaaccgacatattccacttgcacggaaatgacatctttagatattggagtctttatcttt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5444 aaaccgacatattccacttgcacggaaatgacatctttagatattggagtctttatcttt 5385
Query: 451 gtttcataggagaactgaggaggatgatttttggaatagaatattagcgatttaaccggc 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5384 gtttcataggagaactgaggaggatgatttttggaatagaatattagcgatttaaccggc 5325
Query: 511 acataatggatatgtcttagcggcctagcgactcttttcatctctaaaggggaagccaat 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5324 acataatggatatgtcttagcggcctagcgactcttttcatctctaaaggggaagccaat 5265
Query: 571 tccctagggtttggtgaatcatgattatatttcaccacatatgccaacttcggattgtgg 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 5264 tccctagggtttggtgaatcatgattatatttcaccacatatgccaacttcggatcgt-g 5206
Query: 631 tttatttaacaatttcttccgccttggtaaaaaagttacagcattttgtaatttatccag 690
|||||||||||| |||||||||| |||||||| |||||||||| | || |||||||||||
Sbjct: 5205 tttatttaacaa-ttcttccgccatggtaaaagagttacagcagtatg-aatttatccag 5148
Query: 691 aaaggcttgaaagggttaaacatccttgggtttaagggtcatggta 736
||||||||| ||| | ||| |||||||| | |||||||||||||||
Sbjct: 5147 aaaggcttg-aagtggtaagcatccttgtg-ttaagggtcatggta 5104
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7605
Number of Sequences: 1807
Number of extensions: 7605
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)