BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA08RM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig331 648 0.0
>3x_Contig331
Length = 1863
Score = 648 bits (327), Expect = 0.0
Identities = 387/399 (96%), Gaps = 6/399 (1%)
Strand = Plus / Minus
Query: 48 tctgcaccatattgaaatcc-cactattgatagatcttgtatgttctgagagagatgtta 106
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgcaccatattgaaatccacactattgatagatcttgtatgttctgagagagatgtta 742
Query: 107 caactggattgtctatcgctgatgtcttattaatatcgtaaatcgcaacagacgttgaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caactggattgtctatcgctgatgtcttattaatatcgtaaatcgcaacagacgttgaag 682
Query: 167 taccacaaattgctacatagtttttgtgattgtaaaagccagctttaatatcagatatgg 226
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 681 taccacaaattgctacatagtttttgtgattgtaaaagccagctttaacatcagatatgg 622
Query: 227 ttgaaattttttttgttgttctccgtagtgtcgatgaagtgttcttcgtgatcccagtat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgaaattttttttgttgttctccgtagtgtcgatgaagtgttcttcgtgatcccagtat 562
Query: 287 ttgtcttcgctgtctgtaagaaatcatgtacattagttatcgtcttagaatcttcatcga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtcttcgctgtctgtaagaaatcatgtacattagttatcgtcttagaatcttcatcga 502
Query: 347 aagtgtaaataccctaatggcttttttcctgctattatcaagggatctgctcttccgggg 406
||||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||| |
Sbjct: 501 aagtgtaaatacctaaatggc-tttttcctgctattatcaa-ggatctgctc-tccggtg 445
Query: 407 aaatgattttttctatactttgagacttccctttccgat 445
|| ||||||| ||||||| ||||||||| ||||||||||
Sbjct: 444 aattgattttatctatac-ttgagactt-cctttccgat 408
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,716
Number of Sequences: 1807
Number of extensions: 21716
Number of successful extensions: 282
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)