BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC3ZA11FM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1091                                                         775   0.0  

>3x_Contig1091 
          Length = 4701

 Score =  775 bits (391), Expect = 0.0
 Identities = 459/479 (95%), Gaps = 2/479 (0%)
 Strand = Plus / Plus

                                                                       
Query: 83  gaacgttctcacgttaaaaaattcgttttaccataacgaggaaaagttttgtatcccgtg 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gaacgttctcacgttaaaaaattcgttttaccataacgaggaaaagttttgtatcccgtg 490

                                                                       
Query: 143 ttgttctaagaaatgataatattttggtgaaaattgtgctagttgtattgctcacgctgg 202
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttgttctaagaaatgataatatgctggtgaaaattgtgctagttgtattgctcacgctgg 550

                                                                       
Query: 203 cgttatttttataaatttttagcacgatatcattgccaattacaatcggtttgtatatct 262
           ||||| | ||  ||  |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 551 cgttagtatttgaatgttttagcacgatatcagtgccaattacaatcggtttgtatatct 610

                                                                       
Query: 263 ctgaatataacgggtatcggttcggagttttcggatggtgtaaggtggatagatctgttt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ctgaatataacgggtatcggttcggagttttcggatggtgtaaggtggatagatctgttt 670

                                                                       
Query: 323 gctcacccattaggatagggtattcaaaggatgacattcttttgtttaacgaacaagaat 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gctcacccattaggatagggtattcaaaggatgacattcttttgtttaacgaacaagaat 730

                                                                       
Query: 383 atctgcatgtgccgaaccatgcgaaatatgcattatcaaatttactattggttcacgttt 442
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atctgcatctgccgaaccatgcgaaatatgcattatcaaatttactattggttcacgttt 790

                                                                       
Query: 443 tggcatttgtatgcgtaactatcctttgggtatttggaatgttgacatgttttccgttgc 502
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 791 tggcatttgtatgcgtaactatcctttgggtatttggaatgttgacatg-tttccgttgc 849

                                                                      
Query: 503 ataaagacttccagaccaattgttgataatagctgggctatgggctaagcctacattta 561
           |||||||| || |||| || ||||||| ||||||| ||||||| ||| || ||||||||
Sbjct: 850 ataaagacgtcgagacgaa-tgttgatcatagctgtgctatggtctatgcttacattta 907


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5888
Number of Sequences: 1807
Number of extensions: 5888
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)