BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC3ZA11RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1280 854 0.0
>3x_Contig1280
Length = 5058
Score = 854 bits (431), Expect = 0.0
Identities = 462/471 (98%), Gaps = 1/471 (0%)
Strand = Plus / Plus
Query: 48 tctctaggttcaatcttcaaaataatgaagatgttgacgattgccttttcatccttcgta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1729 tctctaggttcaatcttcaaaataatgaagatgttgacgattgccttttcatccttcgta 1788
Query: 108 ggttatattccttcatcagaggctacatcccgccttctccacctcctgatgctgataaac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 ggttatattccttcatcagaggctacatcccgccttctccacctcctgatgctgataaac 1848
Query: 168 aagtctctgcagaagaactagaagaaatcaaagtatctgaagaagtcttgtttaggaagc 227
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1849 aagtctctgcagaagaactagaagaaatcaaagtatctgaagaagtcttgcaaaggaagc 1908
Query: 228 ttctctgcaacatattgacatctgccttacatcaactactaaaggcgagaacatgtatta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 ttctctgcaacatattgacatctgccttacatcaactactaaaggcgagaacatgtatta 1968
Query: 288 gtttactgaattatcactctcaccttcaaggtatacctactttatcaacgagttctgagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 gtttactgaattatcactctcaccttcaaggtatacctactttatcaacgagttctgagt 2028
Query: 348 atcttggtcaattaactgatattctttccagatattatcagttggcaacttcttttgata 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 atcttggtcaattaactgatattctttccagatattatcagttggcaacttcttttgata 2088
Query: 408 tcgatgttttcgcagagtttaagcgactatgtgtagatgaatcccggcgcatttatcgct 467
||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 2089 tcgatgtttccgcagagtttaagcgactatgtgtagatgaatccgtgcgcatctatcgct 2148
Query: 468 cattaccaaaggattccgaaattaaatcggatgaagaatttgaaggaaatc 518
|||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 2149 cattaccaaaggattcggaaattaaatcggatgaagaa-ttgaaggaaatc 2198
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7719
Number of Sequences: 1807
Number of extensions: 7719
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)